Zobrazeno 1 - 10
of 63
pro vyhledávání: '"Orakov A"'
Autor:
Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-19 (2021)
Abstract Genomes are critical units in microbiology, yet ascertaining quality in prokaryotic genome assemblies remains a formidable challenge. We present GUNC (the Genome UNClutterer), a tool that accurately detects and quantifies genome chimerism ba
Externí odkaz:
https://doaj.org/article/34648596e6014e92a141c38319336404
Akademický článek
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Autor:
Schmidt, Thomas S B, Fullam, Anthony, Ferretti, Pamela, Orakov, Askarbek, Maistrenko, Oleksandr M, Ruscheweyh, Hans-Joachim, Letunic, Ivica, Duan, Yiqian, Van Rossum, Thea, Sunagawa, Shinichi, Mende, Daniel R, Finn, Robert D, Kuhn, Michael, Pedro Coelho, Luis, Bork, Peer
Publikováno v:
Nucleic Acids Research; 1/5/2024, Vol. 52 Issue D1, pD777-D783, 7p
Autor:
Luis Pedro Coelho, Renato Alves, Álvaro Rodríguez del Río, Pernille Neve Myers, Carlos P. Cantalapiedra, Joaquín Giner-Lamia, Thomas Sebastian Schmidt, Daniel R. Mende, Askarbek Orakov, Ivica Letunic, Falk Hildebrand, Thea Van Rossum, Sofia K. Forslund, Supriya Khedkar, Oleksandr M. Maistrenko, Shaojun Pan, Longhao Jia, Pamela Ferretti, Shinichi Sunagawa, Xing-Ming Zhao, Henrik Bjørn Nielsen, Jaime Huerta-Cepas, Peer Bork
Publikováno v:
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature
instname
Nature
Funding was provided by the European Union’s Horizon 2020 Research and Innovation Programme (grant 686070: DD-DeCaF to P.B.) and Marie Skłodowska-Curie Actions (grant 713673 to A.R.d.R.), the European Research Council (ERC) MicrobioS (ERC-AdG-6698
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95a951d2db034e39872cb6ce05b2e38c
http://hdl.handle.net/10261/274685
http://hdl.handle.net/10261/274685
Akademický článek
Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
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Autor:
Keller, Marisa Isabell, Nishijima, Suguru, Podlesny, Daniel, Kim, Chan Yeong, Robbani, Shahriyar Mahdi, Schudoma, Christian, Fullam, Anthony, Akanni, Wasiu, Orakov, Askarbek, Schmidt, Thomas Sebastian, Marotta, Federico, Letunic, Ivica, Trebicka, Jonel, Papp, Maria, Laleman, Wim, Uschner, Frank Erhard, Shawcross, Debbie L., Coenraad, Minneke J., Jalan, Rajiv, Clària, Joan, Kuhn, Michael, Van Rossum, Thea, Bork, Peer
Publikováno v:
In Journal of Hepatology June 2024 80 Supplement 1:S48-S48
Akademický článek
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Autor:
Thomas S. B. Schmidt, Simone S. Li, Oleksandr M. Maistrenko, Wasiu Akanni, Luis Pedro Coelho, Sibasish Dolai, Anthony Fullam, Anna M. Glazek, Rajna Hercog, Hilde Herrema, Ferris Jung, Stefanie Kandels, Askarbek Orakov, Roman Thielemann, Moritz von Stetten, Thea Van Rossum, Vladimir Benes, Thomas J. Borody, Willem M. de Vos, Cyriel Y. Ponsioen, Max Nieuwdorp, Peer Bork
Publikováno v:
Nature Medicine 28 (2022) 9
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, Van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature medicine, 28(9), 1902-1912. Nature Publishing Group
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature Medicine, 28(9), 1902-1912. Nature Publishing Group
Nature Medicine, 28(9), 1902-1912
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, Van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature medicine, 28(9), 1902-1912. Nature Publishing Group
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature Medicine, 28(9), 1902-1912. Nature Publishing Group
Nature Medicine, 28(9), 1902-1912
Fecal microbiota transplantation (FMT) is a therapeutic intervention for inflammatory diseases of the gastrointestinal tract, but its clinical mode of action and subsequent microbiome dynamics remain poorly understood. Here we analyzed metagenomes fr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f09ad90a73d39d876c5bd9ef143f308
https://research.wur.nl/en/publications/drivers-and-determinants-of-strain-dynamics-following-fecal-micro
https://research.wur.nl/en/publications/drivers-and-determinants-of-strain-dynamics-following-fecal-micro
Autor:
Kartal, Ece, Schmidt, Thomas S B, Wirbel, Jakob, Maistrenko, Oleksandr M, Akanni, Wasiu A, Alashkar Alhamwe, Bilal, Alves, Renato J, Carrato, Alfredo, Erasmus, Hans-Peter, Estudillo, Lidia, Finkelmeier, Fabian, Fullam, Anthony, Glazek, Anna M, Gómez-Rubio, Paulina, Hercog, Rajna, Jung, Ferris, Kandels, Stefanie, Kersting, Stephan, Langheinrich, Melanie, Márquez, Mirari, Molero, Xavier, Orakov, Askarbek, Van Rossum, Thea, Torres-Ruiz, Raul, Telzerow, Anja, Zych, Konrad, Benes, Vladimir, Zeller, Georg, Trebicka, Jonel, Bork, Peer, Malats, Nuria, Molina-Montes, Esther, Rodriguez Perales, Sandra, Real Arribas, Francisco
Publikováno v:
Repisalud
Instituto de Salud Carlos III (ISCIII)
Gut
Scientia
Instituto de Salud Carlos III (ISCIII)
Gut
Scientia
Cancer prevention; Intestinal microbiology; Pancreatic tumours Prevenció del càncer; Microbiologia intestinal; Tumors pancreàtics Prevención de cáncer; Microbiología intestinal; Tumores pancreáticos Background Recent evidence suggests a role f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c9708fa79de579aaf1125c568f0f59f
http://hdl.handle.net/20.500.12105/13883
http://hdl.handle.net/20.500.12105/13883
Autor:
Orakov, Askarbek, Fullam, Anthony, Coelho, Luis Pedro, Khedkar, Supriya, Szklarczyk, Damian, Mende, Daniel R., Sebastian Benedikt Schmidt, Thomas, Bork, Peer
It's a poster to present the GUNC tool at ISME 2022 Conference. GUNC (the Genome UNClutterer) is a tool that accurately detects and quantifies prokaryotic genome chimerism based on the lineage homogeneity of individual contigs using a genome’s full
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::84c76eaaae2dc2655ab4f1ae43d921fe