Zobrazeno 1 - 10
of 50
pro vyhledávání: '"Olivier, Lespinet"'
Autor:
Chris Papadopoulos, Hugo Arbes, David Cornu, Nicolas Chevrollier, Sandra Blanchet, Paul Roginski, Camille Rabier, Safiya Atia, Olivier Lespinet, Olivier Namy, Anne Lopes
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-25 (2024)
Abstract Background Pervasive translation is a widespread phenomenon that plays a critical role in the emergence of novel microproteins, but the diversity of translation patterns contributing to their generation remains unclear. Based on 54 ribosome
Externí odkaz:
https://doaj.org/article/ff8383a10fe44922aa7eb3904d0b8ed6
Autor:
Leonor Oliveira, Nicolas Chevrollier, Jean-Felix Dallery, Richard J. O’Connell, Marc-Henri Lebrun, Muriel Viaud, Olivier Lespinet
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-13 (2023)
Abstract We report here a new application, CustomProteinSearch (CusProSe), whose purpose is to help users to search for proteins of interest based on their domain composition. The application is customizable. It consists of two independent tools, Ite
Externí odkaz:
https://doaj.org/article/6b5b54ca42974d18b9a31e5969d21caa
Publikováno v:
RNA Biology, Vol 19, Iss 1, Pp 1208-1227 (2022)
This study investigates the importance of the structural context in the formation of a type I/II A-minor motif. This very frequent structural motif has been shown to be important in the spatial folding of RNA molecules. We developed an automated meth
Externí odkaz:
https://doaj.org/article/64ec346cb700473c8866de84e464cfcf
Autor:
Virginia S. Lioy, Jean-Noël Lorenzi, Soumaya Najah, Thibault Poinsignon, Hervé Leh, Corinne Saulnier, Bertrand Aigle, Sylvie Lautru, Annabelle Thibessard, Olivier Lespinet, Pierre Leblond, Yan Jaszczyszyn, Kevin Gorrichon, Nelle Varoquaux, Ivan Junier, Frédéric Boccard, Jean-Luc Pernodet, Stéphanie Bury-Moné
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
Streptomyces bacteria have a linear chromosome, with core genes located in the central region and gene clusters for specialized metabolite biosynthesis found in the ‘arms’. Here, Lioy et al. show that such chromosome structure correlates with gen
Externí odkaz:
https://doaj.org/article/69ebdcca68044d26ae4c0c82ce1b8f3e
Autor:
Jean-Félix Dallery, Nicolas Lapalu, Antonios Zampounis, Sandrine Pigné, Isabelle Luyten, Joëlle Amselem, Alexander H. J. Wittenberg, Shiguo Zhou, Marisa V. de Queiroz, Guillaume P. Robin, Annie Auger, Matthieu Hainaut, Bernard Henrissat, Ki-Tae Kim, Yong-Hwan Lee, Olivier Lespinet, David C. Schwartz, Michael R. Thon, Richard J. O’Connell
Publikováno v:
BMC Genomics, Vol 18, Iss 1, Pp 1-22 (2017)
Abstract Background The ascomycete fungus Colletotrichum higginsianum causes anthracnose disease of brassica crops and the model plant Arabidopsis thaliana. Previous versions of the genome sequence were highly fragmented, causing errors in the predic
Externí odkaz:
https://doaj.org/article/5ef4a99a9f9045df814f4d532703cf5e
Autor:
Abdoul-Razak Tidjani, Jean-Noël Lorenzi, Maxime Toussaint, Erwin van Dijk, Delphine Naquin, Olivier Lespinet, Cyril Bontemps, Pierre Leblond
Publikováno v:
mBio, Vol 10, Iss 5 (2019)
ABSTRACT In this work, by comparing genomes of closely related individuals of Streptomyces isolated at a spatial microscale (millimeters or centimeters), we investigated the extent and impact of horizontal gene transfer in the diversification of a na
Externí odkaz:
https://doaj.org/article/ff96284dea1648d4a50d21b447b6311a
Autor:
Chris Papadopoulos, Hugo Arbes, Nicolas Chevrollier, Sandra Blanchet, David Cornu, Paul Roginski, Camille Rabier, Safiya Atia, Olivier Lespinet, Olivier Namy, Anne Lopes
Pervasive translation is a widespread phenomenon that plays an important role in de novo gene birth; however, its underlying mechanisms remain unclear. Based on multiple Ribosome Profiling (Ribo-Seq) datasets, we investigated the RiboSeq landscape of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::35e06f180bcc5f7f4dd5d917cda3ecd7
https://doi.org/10.1101/2023.03.16.532990
https://doi.org/10.1101/2023.03.16.532990
Autor:
Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. McHardy, Paul Schulze-Lefert, Richard J. O’Connell
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-13 (2016)
Colletotrichum tofieldiae is a beneficial root endophyte, whereas the closely related C. incanumis pathogenic. Here the authors compare the genomes and transcriptomes during host plant interaction and demonstrate that the host plant can respond diffe
Externí odkaz:
https://doaj.org/article/f8b45f63077a44869f87fc67e6e5bba4
Autor:
Nika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphael Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes
Publikováno v:
PLoS Computational Biology, Vol 14, Iss 3, p e1005992 (2018)
We present a new educational initiative called Meet-U that aims to train students for collaborative work in computational biology and to bridge the gap between education and research. Meet-U mimics the setup of collaborative research projects and tak
Externí odkaz:
https://doaj.org/article/e780d76873364d1588f1c361ea6d3e72
Autor:
Mélina Gallopin, Christine Drevet, Vanesa S. Garcia de la Torre, Sarah Jelassi, Marie Michel, Claire Ducos, Cédric Saule, Clarisse Majorel, Valérie Burtet-Sarramegna, Yohan Pillon, Paul Bastide, Olivier Lespinet, Sylvain Merlot
The remarkable capacity of plants to tolerate and accumulate tremendous amount of nickel is a complex adaptative trait that appeared independently in more than 700 species distributed in about fifty families. Nickel hyperaccumulation is thus proposed
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67206e1c1a6af24b6503d86285fece6e
https://hal.science/hal-03835818
https://hal.science/hal-03835818