Výsledky vyhledávání - "Olgert Denas"

Fast and compact matching statistics analytics

Autor: Fabio Cunial, Olgert Denas, Djamal Belazzougui

Publikováno v: Bioinformatics (Oxford, England).

Motivation Fast, lightweight methods for comparing the sequence of ever larger assembled genomes from ever growing databases are increasingly needed in the era of accurate long reads and pan-genome initiatives. Matching statistics is a popular method

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4b0c839f4cbd37678a4cb03b5b7e5109
https://pubmed.ncbi.nlm.nih.gov/35134833

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Topologically associating domains are stable units of replication-timing regulation

Publikováno v: Nature

Eukaryotic chromosomes replicate in a temporal order known as the replication-timing program. In mammals, replication timing is cell-type-specific with at least half the genome switching replication timing during development, primarily in units of 40

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49225868260e4b828fb85b1f7d596fb4
https://doi.org/10.1038/nature13986

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Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution

Autor: Ross C. Hardison, Javier Herrero, Richard Sandstrom, James W. Taylor, Olgert Denas, Yong Cheng, Kathryn Beal

Publikováno v: BMC Genomics

Background Because species-specific gene expression is driven by species-specific regulation, understanding the relationship between sequence and function of the regulatory regions in different species will help elucidate how differences among specie

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eae4973e0454d0d7de82555d82304d7f
http://europepmc.org/articles/PMC4333152

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Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

Autor: Kathryn Beal, Javier Herrero, Richard Sandstrom, Olgert Denas, Ross C. Hardison, Yong Cheng, James W. Taylor

Background: Because species-specific gene expression is driven by species-specific regulation, understanding the relationship between sequence and function of the regulatory regions in different species will help elucidate how differences among speci

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::873b35583c4bb102e981e3ec3386bed3
https://doi.org/10.1101/010926

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A comparative encyclopedia of DNA elements in the mouse genome

Autor: Ting Wang, Matthew D. Rasmussen, Dana N. Levasseur, Thomas A. Reh, Fidencio Neri, Tanya Kutyavin, Peter J. Good, Katrina Learned, Kate R. Rosenbloom, Lei Hoon See, Cedric Notredame, Ross C. Hardison, Chris Zaleski, Gerd A. Blobel, Dmitri D. Pervouchine, Shane Neph, Ali Mortazavi, Tamer Kahveci, Arthur I. Skoultchi, Peter J. Sabo, Jorg Drenkow, Alex Reynolds, Rebecca F. Lowdon, Marella F. T. R. de Bruijn, John A. Stamatoyannopoulos, Yin Shen, Richard Humbert, Anthony Kirilusha, Sherman M. Weissman, Roderic Guigó, James Taylor, Paul Flicek, Kristen Lee, Shinny Vong, Xiaoyi Cao, Douglas Dunn, Alessandra Breschi, Elise A. Feingold, Michael A. Beer, Piper M. Treuting, Igor Antoshechkin, Thomas R. Gingeras, Georgi K. Marinov, Tyrone Ryba, Jin Lian, Christine M. Disteche, Javier Herrero, Eric Rynes, Sheng Zhong, Weisheng Wu, Richard Sandstrom, Gilberto DeSalvo, Michael Snyder, Meagan Fastuca, Miguel Pignatelli, Mark Groudine, Sarah Djebali, Nergiz Dogan, Rajinder Kaul, Giovanni Bussotti, Henry Amrhein, Daniel Bates, Matthew S. Wilken, Alexander Dobin, Manolis Kellis, Licia Selleri, Diane Trout, Morgan Diegel, David M. Gilbert, Zhihai Ma, Jeff Vierstra, Xiao Qiao Zhou, Theresa K. Canfield, Venkat S. Malladi, Zhen Ye, Anthony Shafer, Tejaswini Mishra, Yiing Lin, Samantha Kuan, Anshul Kundaje, Thalia Papayannopoulou, Pablo Prieto, Robert E. Thurman, Long Pham, Cricket A. Sloan, Olgert Denas, Kathryn Beal, Erika Giste, Andrea Tanzer, Katherine I. Fisher-Aylor, Shin Lin, M. A. Bender, Stuart H. Orkin, Carrie A. Davis, Benjamin D. Pope, Rachel Byron, Srikanta Gosh, Beatriz Lacerda de Sousa, R. Scott Hansen, Brian A. Williams, Yong Cheng, Kanwei Li, Dongwon Lee, Yanli Wang, Evan E. Eichler, Camden Jansen, Feng Yue, Deepti Jain, Miaohua Zhang, David McCleary, W. James Kent, Melissa S. Cline, Kai Hsin Chang, Leslie B. Adams, Robert S. Harris, Ghia Euskirchen, Christapher S. Morrissey, Alexander Y. Rudensky, Philip Cayting, Drew T. Erickson, Eric Haugen, Michael J. Pazin, Vanessa M. Kirkup, Yi-Chieh Wu, Trupti Kawli, Mukul S. Bansal, Cheryl A. Keller, Lee Edsall, Robert M. Samstein, Bing Ren, Miguel Santos, Steven Z. Josefowicz, Barbara J. Wold, Julien Lagarde, Alan P. Boyle, Mitchell J. Weiss, Audra K. Johnson

Publikováno v: PMC
Nature
Recercat. Dipósit de la Recerca de Catalunya
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The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To gain greater insights into both shared and species-speci

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6f145cfce45bc7081d45dad46f8b765
http://hdl.handle.net/1721.1/100777

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Knowledge Specialization in PhD Student Groups

Autor: Annamaria Conti, Fabiana Visentin, Olgert Denas

Publikováno v: SSRN Electronic Journal.

It has been argued that specialization within groups yields productivity gains. We evaluate this statement with a focus on groups of PhD students. Using an established technique in computer science, the Latent Dirichlet Allocation (LDA), we construct

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a3a47056a74deb8f4ac39358d2da5dd9
https://doi.org/10.2139/ssrn.2210462

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