Genome composition and phylogeny of microbes predict their co-occurrence in the environment.

Autor: Olga K Kamneva

Publikováno v: PLoS Computational Biology, Vol 13, Iss 2, p e1005366 (2017)

The genomic information of microbes is a major determinant of their phenotypic properties, yet it is largely unknown to what extent ecological associations between different species can be explained by their genome composition. To bridge this gap, th

Externí odkaz: https://doaj.org/article/6a933a210e554c2e9ffa3d38915354f2

Proteins Related to the Type I Secretion System Are Associated with Secondary SecA_DEAD Domain Proteins in Some Species of Planctomycetes, Verrucomicrobia, Proteobacteria, Nitrospirae and Chlorobi.

Autor: Olga K Kamneva, Saroj Poudel, Naomi L Ward

Publikováno v: PLoS ONE, Vol 10, Iss 6, p e0129066 (2015)

A number of bacteria belonging to the PVC (Planctomycetes-Verrucomicrobia-Chlamydiae) super-phylum contain unusual ribosome-bearing intracellular membranes. The evolutionary origins and functions of these membranes are unknown. Some proteins putative

Externí odkaz: https://doaj.org/article/b8aaa1d6a0ed4babb5882fa01501b805

Simulation-Based Evaluation of Hybridization Network Reconstruction Methods in the Presence of Incomplete Lineage Sorting

Autor: Noah A. Rosenberg, Olga K. Kamneva

Publikováno v: Evolutionary Bioinformatics
Evolutionary Bioinformatics, Vol 13 (2017)

Hybridization events generate reticulate species relationships, giving rise to species networks rather than species trees. We report a comparative study of consensus, maximum parsimony, and maximum likelihood methods of species network reconstruction

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8c17d7c0855dd2759da56864798b385e
http://europepmc.org/articles/PMC5395256

Progressive Loss of Function in a Limb Enhancer during Snake Evolution

Autor: Catherine S. Pickle, Elizabeth Lee, Ingrid Plajzer-Frick, Veena Afzal, Brandon J. Mannion, Len A. Pennacchio, Diane E. Dickel, Momoe Kato, Evgeny Z. Kvon, Javier Lopez-Rios, Tyler H. Garvin, Jennifer A. Akiyama, Olga K. Kamneva, Axel Visel, Iros Barozzi, Marco Osterwalder, Virginie Tissières, Edward M. Rubin, Uirá Souto Melo

Publikováno v: Cell, vol 167, iss 3
642.e11
Kvon, EZ; Kamneva, OK; Melo, US; Barozzi, I; Osterwalder, M; Mannion, BJ; et al.(2016). Progressive Loss of Function in a Limb Enhancer during Snake Evolution. Cell, 167(3), 633-642.e11. doi: 10.1016/j.cell.2016.09.028. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/1tk697vx

© 2016 Elsevier Inc. The evolution of body shape is thought to be tightly coupled to changes in regulatory sequences, but specific molecular events associated with major morphological transitions in vertebrates have remained elusive. We identified s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cf6ba01a64d79009208fe936677c68f5
https://escholarship.org/uc/item/1tk697vx

Multidimensional analysis and functional assignment of DNA-microarray transcription profiles of genes involved in adipogenesis

Autor: M. Sh. Badratinov, Olga K. Kamneva, V. M. Efimov, Aleksey V. Katokhin, Viatcheslav A. Mordvinov

Publikováno v: Biophysics. 51:100-109

The results of two independent DNA-microarray experiments concerning adipogenesis in the murine preadipocyte 3T3-L1 cell line, which covered the first two days after the induction of differentiation, were analyzed using the multidimensional scaling (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::807b711de8cb08b388092e255e7eecc8
https://doi.org/10.1134/s0006350906070207