Comparative analysis and classification of highly divergent mouse rDNA units based on their intergenic spacer (IGS) variability.

Autor: Kim JH; National Cancer Institute, Developmental Therapeutics Branch, Bethesda, MD, USA., Nagaraja R; National Institute of Aging, Laboratory of Genetics and Genomics, Baltimore, MD, USA., Ogurtsov AY; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA., Noskov VN; National Cancer Institute, Developmental Therapeutics Branch, Bethesda, MD, USA., Liskovykh M; National Cancer Institute, Developmental Therapeutics Branch, Bethesda, MD, USA., Lee HS; National Cancer Institute, Developmental Therapeutics Branch, Bethesda, MD, USA., Hori Y; The University of Tokyo, Laboratory of Genome Regeneration, Tokyo 113-0032, Japan., Kobayashi T; The University of Tokyo, Laboratory of Genome Regeneration, Tokyo 113-0032, Japan., Hunter K; National Cancer Institute, Laboratory of Cancer Biology and Genetics, Bethesda, MD, USA., Schlessinger D; National Institute of Aging, Laboratory of Genetics and Genomics, Baltimore, MD, USA., Kouprina N; National Cancer Institute, Developmental Therapeutics Branch, Bethesda, MD, USA., Shabalina SA; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA., Larionov V; National Cancer Institute, Developmental Therapeutics Branch, Bethesda, MD, USA.

Publikováno v: NAR genomics and bioinformatics [NAR Genom Bioinform] 2024 Jun 14; Vol. 6 (2), pp. lqae070. Date of Electronic Publication: 2024 Jun 14 (Print Publication: 2024).

Multiplexing the Identification of Microorganisms via Tandem Mass Tag Labeling Augmented by Interference Removal through a Novel Modification of the Expectation Maximization Algorithm.

Autor: Alves G; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, United States., Ogurtsov AY; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, United States., Porterfield H; Department of Laboratory Medicine, Clinical Center, National Institutes of Health, Bethesda, Maryland 20892, United States., Maity T; Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, United States., Jenkins LM; Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, United States., Sacks DB; Department of Laboratory Medicine, Clinical Center, National Institutes of Health, Bethesda, Maryland 20892, United States., Yu YK; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, United States.

Publikováno v: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2024 Jun 05; Vol. 35 (6), pp. 1138-1155. Date of Electronic Publication: 2024 May 13.

Single-character insertion–deletion model preserves long indels in ancestral sequence reconstruction.

Autor: Jowkar, Gholamhossein^1,2,3 (AUTHOR) xjok@zhaw.ch, Pečerska, Jūlija^2,3 (AUTHOR), Gil, Manuel^2,3 (AUTHOR), Anisimova, Maria^2,3 (AUTHOR) maria.anisimova@zhaw.ch

Publikováno v: BMC Bioinformatics. 12/2/2024, Vol. 25 Issue 1, p1-23. 23p.

The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.

Autor: Kim JH; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA., Noskov VN; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA., Ogurtsov AY; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, 20892, USA., Nagaraja R; Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, 21224, USA., Petrov N; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA., Liskovykh M; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA., Walenz BP; Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, 20892, USA., Lee HS; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA., Kouprina N; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA., Phillippy AM; Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, 20892, USA., Shabalina SA; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, 20892, USA. shabalin@ncbi.nlm.nih.gov., Schlessinger D; Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, 21224, USA. schlessingerd@mail.nih.gov., Larionov V; Developmental Therapeutics Branch, National Cancer Institute, Bethesda, MD, 20892, USA. larionov@mail.nih.gov.

Publikováno v: Scientific reports [Sci Rep] 2021 Feb 04; Vol. 11 (1), pp. 2997. Date of Electronic Publication: 2021 Feb 04.

Genome-wide identification, abiotic stress, and expression analysis of PYL family in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) during grain development.

Autor: Xue, Guoxing¹ (AUTHOR), He, Ailing¹ (AUTHOR), Yang, Haizhu¹ (AUTHOR), Song, Lincao¹ (AUTHOR), Li, Huan¹ (AUTHOR), Wu, Chengpeng¹ (AUTHOR), Ruan, Jingjun¹ (AUTHOR) chenggy508@sohu.com

Publikováno v: BMC Plant Biology. 7/30/2024, Vol. 24 Issue 1, p1-15. 15p.