Investigating the benefits and perils of importing genetic material in small cattle breeding programs via simulation

Autor: Obšteter, J. ^*, Jenko, J., Pocrnic, I., Gorjanc, G.

Publikováno v: In Journal of Dairy Science August 2023 106(8):5593-5605

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.

Autor: Lauterbur ME; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, United States., Cavassim MIA; Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, United States., Gladstein AL; Embark Veterinary, Inc, Boston, United States., Gower G; Section for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Pope NS; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Tsambos G; School of Mathematics and Statistics, University of Melbourne, Melbourne, Australia., Adrion J; Institute of Ecology and Evolution, University of Oregon, Eugene, United States.; Ancestry DNA, San Francisco, United States., Belsare S; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Biddanda A; 54Gene, Inc, Washington, United States., Caudill V; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Cury J; Universite Paris-Saclay, CNRS, INRIA, Laboratoire Interdisciplinaire des Sciences du Numerique, Orsay, France., Echevarria I; School of Life Sciences, University of Glasgow, Glasgow, United Kingdom., Haller BC; Department of Computational Biology, Cornell University, Ithaca, United States., Hasan AR; Department of Cell and Systems Biology, University of Toronto, Toronto, Canada.; Department of Biology, University of Toronto Mississauga, Mississauga, Canada., Huang X; Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria.; Human Evolution and Archaeological Sciences (HEAS), University of Vienna, Vienna, Austria., Iasi LNM; Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Noskova E; Computer Technologies Laboratory, ITMO University, St Petersburg, Russian Federation., Obsteter J; Agricultural Institute of Slovenia, Department of Animal Science, Ljubljana, Slovenia., Pavinato VAC; Entomology Department, The Ohio State University, Wooster, United States., Pearson A; Department of Genetics, University of Cambridge, Cambridge, United Kingdom.; Department of Zoology, University of Cambridge, Cambridge, United Kingdom., Peede D; Department of Ecology, Evolution, and Organismal Biology, Brown University, Providence, United States.; Center for Computational Molecular Biology, Brown University, Providence, United States., Perez MF; Department of Genetics and Evolution, Federal University of Sao Carlos, Sao Carlos, Brazil., Rodrigues MF; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Smith CCR; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Spence JP; Department of Genetics, Stanford University School of Medicine, Stanford, United States., Teterina A; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Tittes S; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Unneberg P; Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden., Vazquez JM; Department of Integrative Biology, University of California, Berkeley, Berkeley, United States., Waples RK; Department of Biostatistics, University of Washington, Seattle, United States., Wohns AW; Broad Institute of MIT and Harvard, Cambridge, United States., Wong Y; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, United Kingdom., Baumdicker F; Cluster of Excellence - Controlling Microbes to Fight Infections, Eberhard Karls Universit¨at Tubingen, Tubingen, Germany., Cartwright RA; School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, United States., Gorjanc G; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, United Kingdom., Gutenkunst RN; Department of Molecular and Cellular Biology, University of Arizona, Tucson, United States., Kelleher J; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, United Kingdom., Kern AD; Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Ragsdale AP; Department of Integrative Biology, University of Wisconsin-Madison, Madison, United States., Ralph PL; Institute of Ecology and Evolution, University of Oregon, Eugene, United States.; Department of Mathematics, University of Oregon, Eugene, United States., Schrider DR; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States., Gronau I; Efi Arazi School of Computer Science, Reichman University, Herzliya, Israel.

Publikováno v: ELife [Elife] 2023 Jun 21; Vol. 12. Date of Electronic Publication: 2023 Jun 21.

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Studying global cattle genealogy using tree sequence

Autor: Mafra Fortuna, G. ^*, Obsteter, J., Kranis, A., Gorjanc, G.

Publikováno v: In Animal - Science Proceedings April 2023 14(2):295-296

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