Physics-Based Protein-Structure Prediction Using a Hierarchical Protocol Based on the UNRES Force Field: Assessment in Two Blind Tests

Autor: Ołdziej, S., Czaplewski, C., Liwo, A., Chinchio, M., Nanias, M., Vila, J. A., Khalili, M., Arnautova, Y. A., Jagielska, A., Makowski, M., Schafroth, H. D., Kaźmierkiewicz, R., Ripoll, D. R., Pillardy, J., Saunders, J. A., Kang, Y. K., Gibson, K. D., Scheraga, H. A.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2005 May . 102(21), 7547-7552.

Externí odkaz: https://www.jstor.org/stable/3375572

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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Autor: Keasar, C, McGuffin, LJ, Wallner, B, Chopra, G, Adhikari, B, Bhattacharya, D, Blake, L, Bortot, LO, Cao, R, Dhanasekaran, BK, Dimas, I, Faccioli, RA, Faraggi, E, Ganzynkowicz, R, Ghosh, S, Giełdoń, A, Golon, L, He, Y, Heo, L, Hou, J, Khan, M, Khatib, F, Khoury, GA, Kieslich, C, Kim, DE, Krupa, P, Lee, GR, Li, H, Li, J, Lipska, A, Liwo, A, Maghrabi, AHA, Mirdita, M, Mirzaei, S, Mozolewska, MA, Onel, M, Ovchinnikov, S, Shah, A, Shah, U, Sidi, T, Sieradzan, AK, Ślusarz, M, Ślusarz, R, Smadbeck, J, Tamamis, P, Trieber, N, Wirecki, T, Yin, Y, Zhang, Y, Bacardit, J, Baranowski, M, Chapman, N, Cooper, S, Defelicibus, A, Flatten, J, Koepnick, B, Popović, Z, Zaborowski, B, Baker, D, Cheng, J, Czaplewski, C, Delbem, ACB, Floudas, C, Kloczkowski, A, Ołdziej, S, Levitt, M, Scheraga, H, Seok, C, Söding, J, Vishveshwara, S, Xu, D, Caglar, A, Coral, A, MacMillan, A, Lubow, A, Failer, B, Kestemont, B, Landers, CR, Painter, CR, Garnier, C, Sellin, C, Janz, D, Wheeler, DC

Publikováno v: Keasar, C; McGuffin, LJ; Wallner, B; Chopra, G; Adhikari, B; Bhattacharya, D; et al.(2018). An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports, 8(1). doi: 10.1038/s41598-018-26812-8. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5jp72387

© 2018 The Author(s). Every two years groups worldwide participate in the Critical Assessment of Protein Structure Prediction (CASP) experiment to blindly test the strengths and weaknesses of their computational methods. CASP has significantly advan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::8da7867cebd38bd790e43b99dffda42f
http://www.escholarship.org/uc/item/5jp72387

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Evolution of Experimental and Theoretical Determinations of Protein Structure and Protein Folding Pathways

Autor: Scheraga, H. A., Liwo, A., Czaplewski, C., Ołdziej, S.

Publikováno v: Jülich : John von Neumann Institute for Computing, NIC series 36, 45-54 (2007).
NIC Series Volume 36: From Computational Biophysics to Systems Biology (CBSB07), Ulrich H. E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (Editors), chapter 7, p. 45-54, Jülich : John von Neumann Institute for Computing, 2007. ISBN: 978-3-9810843-2-0

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3364::95efa5dc0e65714661e27d83f07bec7e
https://hdl.handle.net/2128/6400