Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Nynke L. van Berkum"'
Autor:
Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chrast, Paolo Ribeca, David Martin, Ryan R Murray, Xinping Yang, Lila Ghamsari, Chenwei Lin, Ian Bell, Erica Dumais, Jorg Drenkow, Michael L Tress, Josep Lluís Gelpí, Modesto Orozco, Alfonso Valencia, Nynke L van Berkum, Bryan R Lajoie, Marc Vidal, John Stamatoyannopoulos, Philippe Batut, Alex Dobin, Jennifer Harrow, Tim Hubbard, Job Dekker, Adam Frankish, Kourosh Salehi-Ashtiani, Alexandre Reymond, Stylianos E Antonarakis, Roderic Guigó, Thomas R Gingeras
Publikováno v:
PLoS ONE, Vol 7, Iss 1, p e28213 (2012)
The classic organization of a gene structure has followed the Jacob and Monod bacterial gene model proposed more than 50 years ago. Since then, empirical determinations of the complexity of the transcriptomes found in yeast to human has blurred the d
Externí odkaz:
https://doaj.org/article/812c3a8d26464239be0aee257e827b33
Autor:
Luca Giorgetti, Elphège P. Nora, Tristan Piolot, Edda G. Schulz, Edith Heard, Nils Blüthgen, Nynke L. van Berkum, Ikuhiro Okamoto, Joost Gribnau, John W. Sedat, Johannes Meisig, Job Dekker, Emmanuel Barillot, Bryan R. Lajoie, Nicolas Servant
Publikováno v:
Nature; Vol 485
Nature
Nature, 485(7398), 381-385. Nature Publishing Group
Nature
Nature, 485(7398), 381-385. Nature Publishing Group
High-order chromatin folding in topologically associating domains has a critical role in proper long-range transcriptional control around the Xist locus, and presumably throughout the genome. The spatial organization of the genome is linked to biolog
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be787471cc2acce330665724a8ed46b4
Autor:
Maxim Imakaev, Ido Amit, Peter J. Sabo, Job Dekker, Agnes Telling, Michael O. Dorschner, Nynke L. van Berkum, Louise Williams, Leonid A. Mirny, Mark Groudine, Erez Lieberman Aiden, John A. Stamatoyannopoulos, Andreas Gnirke, Richard Sandstrom, Tobias Ragoczy, Bryan R. Lajoie, Eric S. Lander, Bradley E. Bernstein, Michaël Bender
Publikováno v:
Science. 326:289-293
Chromosomal Mapping The conformation of the genome in the nucleus and contacts between both proximal and distal loci influence gene expression. In order to map genomic contacts, Lieberman-Aiden et al. (p. 289 , see the cover) developed a technique to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::479dbc9ef8ce5cf95639472f7b0ea8a6
https://doi.org/10.1126/science.1181369
https://doi.org/10.1126/science.1181369
Autor:
Henri-Marc Bourbon, Nynke L. van Berkum, Michel Werner, Muriel Boube, Claire Boschiero, Benjamin Klapholz, Frank C. P. Holstege, Theo Bijma, Benjamin Guglielmi
Publikováno v:
Nucleic Acids Research. 32:5379-5391
Mediator is a large, modular protein complex remotely conserved from yeast to man that conveys regulatory signals from DNA-binding transcription factors to RNA polymerase II. In Saccharomyces cerevisiae, Mediator is thought to be composed of 24 subun
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::698ab3e8adfc075e29cef05a5227c576
https://doi.org/10.1093/nar/gkh878
https://doi.org/10.1093/nar/gkh878
Autor:
Jaak Vilo, Frank C. P. Holstege, Theo Bijma, Patrick Kemmeren, Nynke L. van Berkum, Alvis Brazma, Rogier Donders
Publikováno v:
Molecular Cell. 9(5):1133-1143
Assays capable of determining the properties of thousands of genes in parallel present challenges with regard to accurate data processing and functional annotation. Collections of microarray expression data are applied here to assess the quality of d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d871ee5496491b83c0b0525a6d5dbe3
Autor:
Reiner Gentz, Thomas K. Albert, Nynke L. van Berkum, Marc Lemaire, H. Th. Marc Timmers, Martine A. Collart
Publikováno v:
Nucleic Acids Research, Vol. 28, No 3 (2000) pp. 809-17
The yeast CCR4-NOT protein complex is a global regulator of RNA polymerase II transcription. It is comprised of yeast NOT1 to NOT5, yeast CCR4 and additional proteins like yeast CAF1. Here we report the isolation of cDNAs encoding human NOT2, NOT3, N
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::925161d69898030218c8e1b7043de084
https://doi.org/10.1093/nar/28.3.809
https://doi.org/10.1093/nar/28.3.809
Autor:
Vincent Lacroix, Sylvain Foissac, Ryan R. Murray, Sarah Djebali, Cédric Howald, Josep Lluís Gelpí, Paolo Ribeca, Alexandre Reymond, Kourosh Salehi-Ashtiani, Marc Vidal, Roderic Guigó, Thomas R. Gingeras, John A. Stamatoyannopoulos, Erica Dumais, Alexander Dobin, Bryan R. Lajoie, Tim Hubbard, Stylianos E. Antonarakis, Catherine Ucla, Ian Bell, Jacqueline Chrast, Alfonso Valencia, Modesto Orozco, Philippe Batut, Christelle Borel, Adam Frankish, Philipp Kapranov, Jorg Drenkow, Michael L. Tress, Chenwei Lin, Jennifer Harrow, Xinping Yang, Lila Ghamsari, Job Dekker, David C. Martin, Jonathan M. Mudge, Julien Lagarde, Nynke L. van Berkum
Publikováno v:
PLoS ONE
PLoS ONE, Vol 7, Iss 1, p e28213 (2012)
PLoS ONE, Public Library of Science, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
PLoS ONE, Public Library of Science, 2012, 7, pp.1-22
PLoS ONE, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
PLoS One, vol. 7, no. 1, pp. e28213
Plos One 1 (7), Non paginé. (2012)
PloS one
PLoS ONE, 2012, 7, pp.1-22
PLOS ONE, Vol. 7, No 1 (2012) P. e28213
PLoS ONE, Vol 7, Iss 1, p e28213 (2012)
PLoS ONE, Public Library of Science, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
PLoS ONE, Public Library of Science, 2012, 7, pp.1-22
PLoS ONE, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
PLoS One, vol. 7, no. 1, pp. e28213
Plos One 1 (7), Non paginé. (2012)
PloS one
PLoS ONE, 2012, 7, pp.1-22
PLOS ONE, Vol. 7, No 1 (2012) P. e28213
The classic organization of a gene structure has followed the Jacob and Monod bacterial gene model proposed more than 50 years ago. Since then, empirical determinations of the complexity of the transcriptomes found in yeast to human has blurred the d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0b4212342caf33154822b46d257cb409
http://europepmc.org/articles/PMC3251577
http://europepmc.org/articles/PMC3251577
Autor:
Michael H. Kagey, Jamie J. Newman, Steve Bilodeau, Ye Zhan, David A. Orlando, Nynke L. van Berkum, Christopher C. Ebmeier, Jesse Goossens, Peter B. Rahl, Stuart S. Levine, Dylan J. Taatjes, Job Dekker, Richard A. Young
Publikováno v:
PMC
Nature
Nature
Transcription factors control cell-specific gene expression programs through interactions with diverse coactivators and the transcription apparatus. Gene activation may involve DNA loop formation between enhancer-bound transcription factors and the t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::afbca013a97a74598d68aa9362ebdd86
https://orcid.org/0000-0001-8855-8647
https://orcid.org/0000-0001-8855-8647
Autor:
Louise Williams, Nynke L. van Berkum, Leonid A. Mirny, Maxim Imakaev, Erez Lieberman-Aiden, Job Dekker, Eric S. Lander, Andreas Gnirke
Publikováno v:
MyJoVE Corporation
Journal of Visualized Experiments : JoVE
Journal of Visualized Experiments : JoVE
The three-dimensional folding of chromosomes compartmentalizes the genome and and can bring distant functional elements, such as promoters and enhancers, into close spatial proximity (2-6). Deciphering the relationship between chromosome organization
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::87e908ac020eec9eb25fb1a9f96febb4
http://hdl.handle.net/1721.1/89531
http://hdl.handle.net/1721.1/89531
Autor:
Frank C. P. Holstege, Eva Apweiler, Patrick Kemmeren, Nynke L. van Berkum, Philip Lijnzaad, Linda V. Bakker, Nathalie Brabers, Hanneke W. M. van Deutekom, Dik van Leenen, Joris J. Benschop
Publikováno v:
Molecular cell, 38(6), 916-928. Cell Press
Analyses of biological processes would benefit from accurate definitions of protein complexes. High-throughput mass spectrometry data offer the possibility of systematically defining protein complexes; however, the predicted compositions vary substan
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::050d8b3bad7a02974b468c9b5c1af108
https://pure.amc.nl/en/publications/a-consensus-of-core-protein-complex-compositions-for-saccharomyces-cerevisiae(61c55a14-1bd8-4721-9055-ca5bb0340131).html
https://pure.amc.nl/en/publications/a-consensus-of-core-protein-complex-compositions-for-saccharomyces-cerevisiae(61c55a14-1bd8-4721-9055-ca5bb0340131).html