The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae

Autor: Nuria Casas-Vila, Sergi Sayols, Lara Pérez-Martínez, Marion Scheibe, Falk Butter

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)

Previous study identified in vivo structured mRNA regions in Saccharomyces cerevisiae by dimethyl sulfate-sequencing. Here the authors use quantitative proteomics to identify protein interactors of 186 RNA folds in S. cerevisiae, providing functional

Externí odkaz: https://doaj.org/article/29ec0775e96c488495a0da324cd2fa01

Table S1 from SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells

Autor: Leandro Castellano, Justin Stebbing, Igor Ulitsky, Keith W. Vance, Tracy Nissan, Alistair Tweedie, Ylenia Lombardo, Neta Degani, Silvia Ottaviani, Angela Yiu, Paul Cathcart, Nuria Casas-Vila, Mark Kalisz, Aleksandra Dabrowska, Alex de Giorgio, Sladjana Zagorac

Differential gene expression DESeq2 analysis for 16h Spheres vs Adh (Sheet #1) and 5d Spheres vs Adh

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85d6644641856d38d9930380fab8f722
https://doi.org/10.1158/0008-5472.22426962.v1

Supplementary Data from SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells

Autor: Leandro Castellano, Justin Stebbing, Igor Ulitsky, Keith W. Vance, Tracy Nissan, Alistair Tweedie, Ylenia Lombardo, Neta Degani, Silvia Ottaviani, Angela Yiu, Paul Cathcart, Nuria Casas-Vila, Mark Kalisz, Aleksandra Dabrowska, Alex de Giorgio, Sladjana Zagorac

Supplementary material and methods

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::219763866dc240b4530569fbdb426d6e
https://doi.org/10.1158/0008-5472.22426965

SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells

Autor: Justin Stebbing, Tracy Nissan, Angela Yiu, Aleksandra Dabrowska, Leandro Castellano, Keith W. Vance, Sladjana Zagorac, Nuria Casas-Vila, Alex de Giorgio, Ylenia Lombardo, Paul Cathcart, Igor Ulitsky, Silvia Ottaviani, Mark Kalisz, Neta Degani, Alistair Tweedie

Publikováno v: Zagorac, S, de Giorgio, A, Dabrowska, A, Kalisz, M, Casas-Vila, N, Cathcart, P, Yiu, A, Ottaviani, S, Degani, N, Lombardo, Y, Tweedie, A, Nissan, T, Vance, K W, Ulitsky, I, Stebbing, J & Castellano, L 2021, ' SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells ', Cancer Research, vol. 81, no. 3, pp. 580-593 . https://doi.org/10.1158/0008-5472.CAN-20-2612

In many tumors, cells transition reversibly between slow-proliferating tumor-initiating cells (TIC) and their differentiated, faster-growing progeny. Yet, how transcriptional regulation of cell-cycle and self-renewal genes is orchestrated during thes

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0906db9c83d79e27c9327321ed1a97ba
https://doi.org/10.1158/0008-5472.can-20-2612

The developmental proteome of Drosophila melanogaster

Autor: Falk Butter, Sergi Sayols, Nuria Casas-Vila, Tina Altenhein, Benjamin Altenhein, Jean-Yves Roignant, Nadja Dinges, Mario Dejung, Dennis Kappei, Alina Bluhm

Publikováno v: Genome Research. 27:1273-1285

Drosophila melanogaster is a widely used genetic model organism in developmental biology. While this model organism has been intensively studied at the RNA level, a comprehensive proteomic study covering the complete life cycle is still missing. Here

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::51de81900cf67c66a9c202cc44721b27
https://doi.org/10.1101/gr.213694.116