VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.

Autor: Alvarez-Jarreta J; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Amos B; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Aurrecoechea C; University of Georgia, Athens, GA 30602, USA., Bah S; School of Infection and Immunity, University of Glasgow, Glasgow, UK., Barba M; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Barreto A; University of Pennsylvania, Philadelphia, PA 19104, USA., Basenko EY; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Belnap R; University of Georgia, Athens, GA 30602, USA., Blevins A; University of Pennsylvania School of Veterinary Medicine, Philadelphia, PA 19104, USA., Böhme U; University of Georgia, Athens, GA 30602, USA., Brestelli J; University of Pennsylvania, Philadelphia, PA 19104, USA., Brown S; University of Pennsylvania, Philadelphia, PA 19104, USA., Callan D; University of Pennsylvania, Philadelphia, PA 19104, USA., Campbell LI; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Christophides GK; Imperial College London, South Kensington, London SW7 2BU, UK., Crouch K; School of Infection and Immunity, University of Glasgow, Glasgow, UK., Davison HR; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., DeBarry JD; University of Georgia, Athens, GA 30602, USA., Demko R; University of Pennsylvania, Philadelphia, PA 19104, USA., Doherty R; University of Pennsylvania, Philadelphia, PA 19104, USA., Duan Y; University of Pennsylvania, Philadelphia, PA 19104, USA., Dundore W; University of Georgia, Athens, GA 30602, USA., Dyer S; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Falke D; University of Georgia, Athens, GA 30602, USA., Fischer S; University of Pennsylvania, Philadelphia, PA 19104, USA., Gajria B; University of Pennsylvania, Philadelphia, PA 19104, USA., Galdi D; University of Pennsylvania, Philadelphia, PA 19104, USA., Giraldo-Calderón GI; University of Notre Dame, Notre Dame, IN 46556, USA., Harb OS; University of Pennsylvania, Philadelphia, PA 19104, USA., Harper E; University of Pennsylvania, Philadelphia, PA 19104, USA., Helb D; University of Pennsylvania, Philadelphia, PA 19104, USA., Howington C; University of Notre Dame, Notre Dame, IN 46556, USA., Hu S; University of Pennsylvania, Philadelphia, PA 19104, USA., Humphrey J; University of Georgia, Athens, GA 30602, USA., Iodice J; University of Pennsylvania, Philadelphia, PA 19104, USA., Jones A; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Judkins J; University of Pennsylvania, Philadelphia, PA 19104, USA., Kelly SA; Imperial College London, South Kensington, London SW7 2BU, UK., Kissinger JC; University of Georgia, Athens, GA 30602, USA., Kittur N; University of Georgia, Athens, GA 30602, USA., Kwon DK; University of Notre Dame, Notre Dame, IN 46556, USA., Lamoureux K; University of Georgia, Athens, GA 30602, USA., Li W; University of Pennsylvania, Philadelphia, PA 19104, USA., Lodha D; European Bioinformatics Institute, Hinxton CB10 1SD, UK., MacCallum RM; Imperial College London, South Kensington, London SW7 2BU, UK., Maslen G; Imperial College London, South Kensington, London SW7 2BU, UK., McDowell MA; University of Notre Dame, Notre Dame, IN 46556, USA., Myers J; University of Pennsylvania, Philadelphia, PA 19104, USA., Nural MV; University of Georgia, Athens, GA 30602, USA., Roos DS; University of Pennsylvania, Philadelphia, PA 19104, USA., Rund SSC; University of Notre Dame, Notre Dame, IN 46556, USA., Shanmugasundram A; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.; Genomics England Limited, London E14 5AB, UK., Sitnik V; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Spruill D; University of Georgia, Athens, GA 30602, USA., Starns D; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Tomko SS; University of Pennsylvania, Philadelphia, PA 19104, USA., Wang H; University of Georgia, Athens, GA 30602, USA., Warrenfeltz S; University of Georgia, Athens, GA 30602, USA., Wieck R; University of Notre Dame, Notre Dame, IN 46556, USA., Wilkinson PA; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Zheng J; University of Pennsylvania, Philadelphia, PA 19104, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2024 Jan 05; Vol. 52 (D1), pp. D808-D816.

MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques.

Autor: DeBarry JD; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Nural MV; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Pakala SB; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, 37232, USA., Nayak V; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Cancer Data Science Initiatives, Frederick National Laboratory for Cancer Research, Post Office Box B, Frederick, MD, 21702, USA., Warrenfeltz S; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA., Humphrey J; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA., Lapp SA; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA., Cabrera-Mora M; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Brito CFA; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Laboratório de Malária, Instituto René Rachou/Fiocruz Minas, Av. Augusto de Lima 1715, Belo Horizonte, MG, 30190 009, Brazil., Jiang J; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA., Saney CL; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Center for Vaccines and Immunology, University of Georgia, Athens, GA, 30605, USA., Hankus A; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Senior Public Health Informaticist, MITRE Corp, Atlanta, GA, 30345, USA., Stealey HM; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, 78712, USA., DeBarry MB; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Lackman N; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Legall N; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Interdisciplinary Disease Ecology Across Scales Research Traineeship Program, Institute of Bioinformatics, Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, 30602, USA., Lee K; Center for Integrative Genomics, School of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA., Tang Y; School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, 30332, USA.; Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA., Gupta A; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA.; Valted Seq, 704 Quince Orchard Rd, Gaithersburg, MD, 20878, USA., Trippe ED; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Federal Drug Administration, Silver Spring, MD, 20993, USA., Bridger RR; Complex Carbohydrate Research Center, Department of Biochemistry, University of Georgia, Athens, GA, 30602, USA., Weatherly DB; Complex Carbohydrate Research Center, Department of Biochemistry, University of Georgia, Athens, GA, 30602, USA., Peterson MS; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA., Jiang X; Division of Endocrinology, Metabolism & Lipid Research, Washington University School of Medicine, St. Louis, MO, 63110, USA., Tran V; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Uppal K; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Fonseca LL; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA.; Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of Florida, Gainesville, FL, 32603, USA., Joyner CJ; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Center for Tropical and Emerging Global Disease, University of Georgia, Athens, GA, 30602, USA.; Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, 30602, USA., Karpuzoglu E; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Biosciences and Diagnostic Imaging, College of Veterinary Medicine, University of Georgia, Athens, GA, 30602, USA., Cordy RJ; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Biology, Wake Forest University, Winston Salem, NC, 27103, USA., Meyer EVS; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Institutional Animal Care and Use Committee, Research Compliance and Research Integrity Office, Emory University, Atlanta, GA, 30322, USA., Wells LL; Complex Carbohydrate Research Center, Department of Biochemistry, University of Georgia, Athens, GA, 30602, USA., Ory DS; Division of Endocrinology, Metabolism & Lipid Research, Washington University School of Medicine, St. Louis, MO, 63110, USA.; Casma Therapeutics, Cambridge, MA, 02139, USA., Lee FE; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA.; Lowance Center for Human Immunology, Emory University, Atlanta, GA, 30322, USA., Tirouvanziam R; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA., Gutiérrez JB; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Department of Mathematics, Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; University of Texas at San Antonio, San Antonio, TX, 78249, USA., Ibegbu C; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA., Lamb TJ; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA.; Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Pathology, University of Utah, Salt Lake City, UT, 84112, USA., Pohl J; Biotechnology Core Facility Branch, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA., Pruett ST; Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; University of Tennessee, Knoxville, TN, 37996, USA., Jones DP; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Styczynski MP; School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, 30332, USA., Voit EO; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA., Moreno A; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Galinski MR; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Kissinger JC; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.; Department of Genetics, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.

Publikováno v: Scientific data [Sci Data] 2022 Nov 24; Vol. 9 (1), pp. 722. Date of Electronic Publication: 2022 Nov 24.

Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi.

Autor: Peterson MS; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; Emory University School of Medicine, Atlanta, GA, USA., Joyner CJ; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; Center for Vaccines and Immunology, Department of Infectious Diseases, University of Georgia, Athens, GA, USA.; Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, USA., Brady JA; School of Chemical, Materials and Biomedical Engineering, University of Georgia, Athens, GA, USA.; Eli Lilly and Company, Indianapolis, IN, USA., Wood JS; Division of Animal Resources, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Cabrera-Mora M; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; College of Veterinary Medicine, University of Georgia, Athens, GA, USA., Saney CL; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA., Fonseca LL; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.; Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, College of Medicine, University of Florida, Gainesville, FL, USA., Cheng WT; Center for Vaccines and Immunology, Department of Infectious Diseases, University of Georgia, Athens, GA, USA., Jiang J; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA., Lapp SA; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA., Soderberg SR; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; Thermo Fisher Scientific, South San Francisco, CA, USA., Nural MV; Institute of Bioinformatics, University of Georgia, Athens, GA, USA., Humphrey JC; Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA, USA., Hankus A; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; The MITRE Corporation, Atlanta, GA, USA., Machiah D; Division of Pathology, Yerkes National Primate Research Center, Atlanta, GA, USA., Karpuzoglu E; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; Department of Biosciences and Diagnostic Imaging, College of Veterinary Medicine, University of Georgia, Athens, GA, USA., DeBarry JD; Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; Center for Topical and Emerging Global Diseases, University of Georgia, Athens, GA, USA., Tirouvanziam R; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, USA., Kissinger JC; Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; Department of Genetics, University of Georgia, Athens, GA, USA.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA., Moreno A; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA., Gumber S; Division of Pathology, Yerkes National Primate Research Center, Atlanta, GA, USA.; Department of Pathology and Laboratory Medicine, Emory School of Medicine, Atlanta, GA, USA.; Pathology, Drug Safety, and DMPK, Boehringer Ingelheim Animal Health USA, Inc., Athens, GA, USA., Voit EO; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA., Gutiérrez JB; Department of Mathematics, University of Georgia, Athens, GA, USA.; Department of Mathematics, University of Texas at San Antonio, San Antonio, TX, USA., Cordy RJ; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Emory Vaccine Center, Emory University, Atlanta, GA, USA.; Department of Biology, Wake Forest University, Winston-Salem, NC, USA., Galinski MR; Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA. Mary.Galinski@emory.edu.; Emory Vaccine Center, Emory University, Atlanta, GA, USA. Mary.Galinski@emory.edu.; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA. Mary.Galinski@emory.edu.

Publikováno v: Malaria journal [Malar J] 2021 Dec 30; Vol. 20 (1), pp. 486. Date of Electronic Publication: 2021 Dec 30.

Correction to: Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques.

Autor: Tang Y; School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA.; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Joyner CJ; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Cabrera-Mora M; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Saney CL; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Lapp SA; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Nural MV; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; Department of Computer Science, University of Georgia, Athens, GA, USA., Pakala SB; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Institute of Bioinformatics, University of Georgia, Athens, GA, USA., DeBarry JD; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Institute of Bioinformatics, University of Georgia, Athens, GA, USA., Soderberg S; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA., Kissinger JC; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; Department of Genetics, University of Georgia, Athens, GA, USA.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA.; Department of Computer Science, University of Georgia, Athens, GA, USA., Lamb TJ; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Department of Pathology, University of Utah, Salt Lake City, UT, USA., Galinski MR; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.; Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, GA, USA., Styczynski MP; School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA. mark.styczynski@chbe.gatech.edu.; Malaria Host-Pathogen Interaction Center, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA. mark.styczynski@chbe.gatech.edu.

Publikováno v: Malaria journal [Malar J] 2017 Dec 04; Vol. 16 (1), pp. 486. Date of Electronic Publication: 2017 Dec 04.

Automated Predictive Big Data Analytics Using Ontology Based Semantics.

Autor: Nural MV; Department of Computer Science, Statistics University of Georgia, Athens., Cotterell ME; Department of Computer Science, Statistics University of Georgia, Athens., Peng H; Department of Computer Science, Statistics University of Georgia, Athens., Xie R; Department of Statistics University of Georgia, Athens., Ma P; Department of Statistics University of Georgia, Athens.; Department of Computer Science, Statistics University of Georgia, Athens., Miller JA; Department of Computer Science, Statistics University of Georgia, Athens.

Publikováno v: International journal of big data [Int J Big Data] 2015 Oct; Vol. 2 (2), pp. 43-56.