Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae)

Autor: Paulo Mafra D’Almeida Costa, Romain Guyot, Perla Hamon, Caroline Duret, Serge Hamon, Pierre-Olivier Duroy, Christine Dubreuil-Tranchant, Valérie Poncet, Emmanuel Couturon, Norosoa J. Razafinarivo, Alexandre de Kochko

Publikováno v: Molecular Genetics and Genomics

In the study, we developed new markers for phylogenetic relationships and intraspecies differentiation in Coffea. Nana and Divo, two novel Ty1-copia LTR-retrotransposon families, were isolated through C. canephora BAC clone sequencing. Nana- and Divo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8002e07599575d2d91d89a8e1116b46
https://doi.org/10.1007/s00438-011-0617-0

Contributors

Autor: Helena Abramovič, Ramesh Kumar Aggarwal, Sélastique Akaffou, Elena Alonzo, Rita C. Alves, Flávia Maria Alves, Angélica Amato, Andrea Gonçalves Antonio, Laélia Soares de Assunção, Rodolphe Anty, Adriana Pavesi Arisseto, Hiroshi Ashihara, Luciana Azevedo, Flávio Henrique Baggio Aguiar, Christiana Bagusat, Michele Balzano, Teresa J. Bandosz, Davide Barreca, M. Fátima Barroso, Marie-Soleil Beaudoin, Ettore Beghi, Iris R. Bell, Ersilia Bellocco, Michael Bergman, Hanna Bessler, Ann M. Bode, Richard R. Bootzin, Fernanda Borges, Ana F. Branco, Franciszek Burdan, Gerhard Bytof, Li Cai, Chuanhai Cao, Giovanni Caprioli, Casimiro Cárdenas, Gianfranco Carlomagno, Dayene do Carmo Carvalho, Susana Casal, Daniela Catalano, Lodovica Cavalli, Renata M.S. Celeghini, Igor Cesarino, Chien-Chia Chen, Chien-Wen Chen, Hsiu-Mei Chiang, Li Chu, Manuel A. Coimbra, Sílvia Vilares Conde, Manuela Cortese, Nathália Carvalho Costa, Jennifer Cousins, Emmanuel Couturon, Theresa Cowan, Dominique Crouzillat, Diana Cruz, Sara Cunha, Teresa H.M. da Costa, Thiago de Almeida Paula, Marliane de Cássia Soares da Silva, Raffaele De Caterina, Sara De Grazia, Alexandre de Kochko, Marta de Toledo Benassi, Cristiana Schmidt de Magalhães, Carmen L. de Oliveira Petkowicz, Isabel C.N. Debien, Cristina Delerue-Matos, Cláudia Deus, Jeena Devasia, Romina di Giuseppe, Meir Djaldetti, M. Rosário M. Domingues, Zigang Dong, José G. Dorea, Giselle Duarte, Abel J. Duarte, Abdelfatteh El Omri, Rafael Carlos Eloy Dias, Kristin F. Enga, Ramon Estruch, Adriana Farah, Franziska Ferk, Flávio Lemes Fernandes, Silvana Ficarra, Adriana S. Franca, Andreas G. Franke, B.B. Fredholm, Natale G. Frega, Otniel Freitas-Silva, Carlotta Galeone, Maria Letícia Galluzzi Bizzo, Antonio Galtieri, Valerie Gebara, Jeanine M. Genkinger, Bruno Giardina, Giorgia Giussani, Daniel Cohen Goldemberg, María Begoña González-García, Masao Goto, Luis Goya, Terry E. Graham, Maria Pedro Guarino, Romain Guyot, Perla Hamon, Serge Hamon, Xiaolong Han, Junkyu Han, John-Bjarne Hansen, Takeshi Hirano, Van Dong Hoang, Ya-Han Huang, Kiharu Igarashi, Takuya Imatoh, Kuniyo Inouye, Hiroko Isoda, Hideo Iwahashi, null Jayarama, Jhe-Hua Jhang, Sandra Kalthoff, G. Kanimozhi, Karifala Kante, Ba, Julie Ann Kemp, Jiyoung Kim, Maik Kleinwächter, Siegfried Knasmüller, Sarita Konka, Carlo La Vecchia, Dirk W. Lachenmeier, Rosa M. Lamuela-Raventós, Diogo R. Lara, Andy H. Lee, Ki Won Lee, Seong-Gene Lee, Loong-Tak Lim, Everaldo Antônio Lopes, João A. Lopes, José Roberto Lovadino, Paolo Lucci, Defu Ma, Jan-Nan Ma, Chao-Mei Ma, Luis M. Magalhães, Lucianne Cople Maia, C. Mani, Maria Angeles Martín, Fabio Martines, Giuseppe F. Martines, Anna Vittoria Mattioli, Paulo Mazzafera, Miguel Á. Medina, Alexander Medina-Remón, Maria Catarina Megumi Kasuya, Maria Angela A. Meireles, Marta Mesias, Paolo Messina, Nuno Milhazes, Miroslav Mišík, Santiago Monleón, Thea Moore, Francisco J. Morales, Ana S.P. Moreira, Haruki Morii, Caroline Moura, Massimo Mozzon, Solange I. Mussatto, Tamiji Nakashima, Alessandra Napolitano, Yusaku Narita, Armen Nersesyan, Lena Maria Nilsson, Gislaine C. Nogueira, Fernando M. Nunes, Mateus Dias Nunes, Débora Alves Nunes Leite Lima, Masanori Ogawa, M. Beatriz P.P. Oliveira, Leandro S. Oliveira, Paulo J. Oliveira, Edna Maria Morais Oliveira, Deborah Pacetti, Lucia Panzella, Alexandre Pariente, Jae B. Park, Andrés Parra, Ricardo N.M.J. Páscoa, Silvia Pastoriza, Cláudia Braga Pereira Bento, Ngoc M. Pham, Núbia Pavesi Pini, Subbiah Poopathi, Adriana Lofrano Porto, N.R. Prasad, Victor R. Preedy, Luiz Filipe Protasio Pereira, Elisabetta Pupillo, Ana R. Quesada, Jean-Jacques Rakotomalala, Maria João Ramalhosa, Sonia Ramos, António O.S.S. Rangel, Norosoa J. Razafinarivo, Caio E.G. Reis, Giulia Renda, Maria João Ribeiro, Michel Rigoreau, José Maria Rodrigues da Luz, Marcelo Rodrigues dos Reis, Jéssica Emiliane Rodrigues Gorri, Student, Mauricio A. Rostagno, Daniele Ruela de Carvalho, José A. Rufián-Henares, Annamaria Russo, Joana Sacramento, Gianni Sagratini, Eiko Sakai, Hertzel Salman, Victoria F. Samanidou, Manuela Cristina P. de A. Santiago, Thiago Ferreira dos Santos, João R. Santos, Vilma Sardão, Mafalda Cruz Sarraguça, Kazunori Sasaki, Luiza Berguinins Scancetti, Dirk Selmar, Teresa L. Serafim, Jane Shearer, Takayuki Shibamoto, Sonja Siljak-Yakovlev, Cristina Soares, Andressa Moreira de Souza, Karl Speer, Marie-Pierre St-Onge, Christian P. Strassburg, Nayani Surya Prakash, Davide Tagliazucchi, Yuko Takano-Ishikawa, Jessica Emi Takarada, Hiroomi Tamura, Wei Tang, Masaru Tanokura, Alessandra Tavani, Furqan H. Tejani, Ester Tellone, Suzana Tiemi Ivamoto, Van Dinh Tran, Anna Tresserra-Rimbau, Francesca M. Trovato, Guglielmo M. Trovato, Takayuki Tsukuba, Jasmine M. Tunnicliffe, Federica Turati, Nataša Poklar Ulrih, Vittorio Unfer, Yuichi Uwai, Alberto Vaiarelli, Eduardo Vicente, Tiago Vieira, Concepción Vinader-Caerols, Sauro Vittori, Xiuju Wang, Peiyu Wang, Hsiao-Wen Wang, Feifei Wei, Cornelia Weikert, Kuo-Ching Wen, Janine Wirth, Qing Xu, Yibin Xu, Orie Yoshinari, Jianping Zuo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::1e2295bb7e1ce9471cd987ca4e7ed3b3
https://doi.org/10.1016/b978-0-12-409517-5.01002-0

Site-specific insertion polymorphism of the MITE Alex-1 in the genus Coffea suggests interspecific gene flow

Autor: Romain Guyot, Norosoa J. Razafinarivo, Christine Dubreuil-Tranchant, Marion de la Mare, Perla Hamon, Alexandre de Kochko, Caroline Duret, Amira Guellim, Serge Hamon, Valérie Poncet

Publikováno v: International Journal of Evolutionary Biology

Miniature Inverted-repeat Transposable Elements (MITEs) are small nonautonomous class-II transposable elements distributed throughout eukaryotic genomes. We identified a novel family of MITEs (named Alex) in the Coffea canephora genome often associat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0fce97a562cc4a18fad113e88adabdcc
http://www.documentation.ird.fr/hor/fdi:010052679