DIMA 2.0—predicted and known domain interactions

Autor: Normann Strack, Oksana Tovstukhina, Volker Stümpflen, Matthias Oesterheld, Dmitrij Frishman, Philipp Pagel

Publikováno v: Nucleic Acids Research
Nucleic Acids Res. 36, D651-655 (2008)

DIMA-the domain interaction map has evolved from a simple web server for domain phylogenetic profiling into an integrative prediction resource combining both experimental data on domain-domain interactions and predictions from two different algorithm

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0decb922c968bfa034485acff1596bb
http://europepmc.org/articles/PMC2238836

Dynamics of Gene Expression Revealed by Comparison of Serial Analysis of Gene Expression Transcript Profiles from Yeast Grown on Two Different Carbon Sources

Autor: Marlene van den Berg, Kaj Albermann, Arnoud J. Kal, Bernard Dujon, Wilhelm Ansorge, Marian J. A. Groot Koerkamp, Alexandra Richter, Anton Jan van Zonneveld, Vladimir Benes, Normann Strack, Henk F. Tabak, Jan M. Ruijter

Publikováno v: Molecular biology of the cell, 10(6), 1859-1872. American Society for Cell Biology

We describe a genome-wide characterization of mRNA transcript levels in yeast grown on the fatty acid oleate, determined using Serial Analysis of Gene Expression (SAGE). Comparison of this SAGE library with that reported for glucose grown cells revea

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f27f82f52b911ee4260686248d7a9fe
https://doi.org/10.1091/mbc.10.6.1859

Computational prediction of domain interactions

Autor: Philipp, Pagel, Normann, Strack, Matthias, Oesterheld, Volker, Stümpflen, Dmitrij, Frishman

Publikováno v: Methods in molecular biology (Clifton, N.J.). 396

Conserved domains carry many of the functional features found in the proteins of an organism. This includes not only catalytic activity, substrate binding, and structural features but also molecular adapters, which mediate the physical interactions b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::beefacb8c52c846d0c3591f7a618d8e4
https://pubmed.ncbi.nlm.nih.gov/18025682

CYGD: the Comprehensive Yeast Genome Database

Autor: José E. Pérez-Ortín, Gabi Kastenmüller, Ulrich Güldener, Emmanuel Talla, Claude Gaillardin, José García-Martínez, Jean Luc Souciet, Hans-Werner Mewes, H. Michael, Bernard Dujon, Elisabeth Bon, J. Richelles, Normann Strack, J. van Helden, Andreas Kaps, Bernard Andre, Martin Münsterkötter, Christian Lemer, J. de Montigny, Shoshana J. Wodak

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, 2005, 33 (Database issue), pp.D364-8. ⟨10.1093/nar/gki053⟩
Nucleic Acids Research Database issue (33), D364-8. (2005)
Nucleic Acids Research, Oxford University Press, 2005, 33 (Database issue), pp.D364-8. ⟨10.1093/nar/gki053⟩
Güldener, U Münsterkötter, M. Kastenmüller, G Strack1, N van Helden, J. Lemer, C. Richelles, J. Wodak, S.J. García Martínez, José Pérez Ortín, José E. Michael, H. Kaps, A. Talla, E. Dujon, B. André, B. Souciet, J.L. De Montigny, J. Bon, E. Gaillardin, C. Mewes, H.W. 2005 CYGD: The Comprehensive Yeast Genome Database. Nucleic Acids Research 33 suppl 1 D364 D368
RODERIC. Repositorio Institucional de la Universitat de Valéncia
instname
Nucleic Acids Research 33, D364-D368. (2005)
Nucleic Acids Res. 33, SI, D364-368 (2005)

The comprehensive resource is available under http://mips.gsf.de/genre/proj/yeast/.; International audience; The Comprehensive Yeast Genome Database (CYGD) compiles a comprehensive data resource for information on the cellular functions of the yeast

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff2ea3166af5f48cd8b9f984da4d0060
https://inria.hal.science/inria-00339841