Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Noreen R Gonzales"'
Autor:
Jiyao Wang, Farideh Chitsaz, Myra K Derbyshire, Noreen R Gonzales, Marc Gwadz, Shennan Lu, Gabriele H Marchler, James S Song, Narmada Thanki, Roxanne A Yamashita, Mingzhang Yang, Dachuan Zhang, Chanjuan Zheng, Christopher J Lanczycki, Aron Marchler-Bauer
Publikováno v:
Nucleic Acids Res
NLM’s conserved domain database (CDD) is a collection of protein domain and protein family models constructed as multiple sequence alignments. Its main purpose is to provide annotation for protein and translated nucleotide sequences with the locati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a23e8d285740f47fa03d9ff6ed76ca9e
https://pubmed.ncbi.nlm.nih.gov/36477806
https://pubmed.ncbi.nlm.nih.gov/36477806
Autor:
Farideh Chitsaz, Narmada Thanki, A Scott Durkin, Azat Badretdin, Jiyao Wang, Wenjun Li, Marc Gwadz, James S. Song, George Coulouris, Françoise Thibaud-Nissen, Kathleen R O’Neill, Michael DiCuccio, Aron Marchler-Bauer, Christopher J. Lanczycki, Noreen R. Gonzales, Mingzhang Yang, Chanjuan Zheng, Vyacheslav Chetvernin, Daniel H. Haft, Myra K. Derbyshire, Roxanne A. Yamashita
Publikováno v:
Nucleic Acids Res
The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information (NCBI) contains nearly 200 000 bacterial and archaeal genomes and 150 million proteins with up-to-date annotation. Changes in the Prokaryotic Genome Annotati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4abe9be36ae164020859ea6292a580f
https://doi.org/10.1093/nar/gkaa1105
https://doi.org/10.1093/nar/gkaa1105
Autor:
Chanjuan Zheng, Kathleen O'Neill, Gabriele H. Marchler, Vyacheslav Chetvernin, Kim D. Pruitt, Vyacheslav Brover, Farideh Chitsaz, Françoise Thibaud-Nissen, Lewis Y. Geer, Daniel H. Haft, Michael DiCuccio, Myra K. Derbyshire, Fu Lu, Roxanne A. Yamashita, Noreen R. Gonzales, James S. Song, Aron Marchler-Bauer, Wenjun Li, Marc Gwadz, Narmada Thanki, Azat Badretdin
Publikováno v:
Nucleic Acids Research
The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information (NCBI) provides annotation for over 95 000 prokaryotic genomes that meet standards for sequence quality, completeness, and freedom from contamination. Genome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eb77170e990ef1713611990acbf3ae1c
https://doi.org/10.1093/nar/gkx1068
https://doi.org/10.1093/nar/gkx1068
Autor:
Gabriele H. Marchler, Jiyao Wang, Farideh Chitsaz, Chanjuan Zheng, Mingzhang Yang, Christopher J. Lanczycki, Aron Marchler-Bauer, Noreen R. Gonzales, Renata C. Geer, Marc Gwadz, Narmada Thanki, Myra K. Derbyshire, Shennan Lu, James S. Song, Dachuan Zhang, Roxanne A. Yamashita, David I. Hurwitz
As NLM’s Conserved Domain Database (CDD) enters its 20th year of operations as a publicly available resource, CDD curation staff continues to develop hierarchical classifications of widely distributed protein domain families, and to record conserve
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02467eba4b85828c38c5e5c811539d4c
https://europepmc.org/articles/PMC6943070/
https://europepmc.org/articles/PMC6943070/
Autor:
Noreen R. Gonzales, Roxanne A. Yamashita, W. John Wilbur, Aron Marchler-Bauer, Narmada Thanki, Natalie Xie, Chanjuan Zheng, Zhiyong Lu, Rezarta Islamaj
Publikováno v:
Database. 2019
This study proposes a text similarity model to help biocuration efforts of the Conserved Domain Database (CDD). CDD is a curated resource that catalogs annotated multiple sequence alignment models for ancient domains and full-length proteins. These m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::48faa0dd20a9413a5845a1cdbfadee06
https://doi.org/10.1093/database/baz064
https://doi.org/10.1093/database/baz064
Autor:
James S. Song, Yu Bo, Narmada Thanki, Dachuan Zhang, Zhouxi Wang, Jane He, Myra K. Derbyshire, Roxanne A. Yamashita, Stephen H. Bryant, Farideh Chitsaz, Noreen R. Gonzales, Lianyi Han, Lewis Y. Geer, Aron Marchler-Bauer, Chanjuan Zheng, Christopher J. Lanczycki, Marc Gwadz, Renata C. Geer, Fu Lu, Gabriele H. Marchler, Shennan Lu, David I. Hurwitz
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) aims at annotating biomolecular sequences with the location of evolutionarily conserved protein domain footprints, and functional sites inferred from such footprints. An archive of pre-computed domain annotation
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9c30d634a911db3a43593b0153fe530a
https://pubmed.ncbi.nlm.nih.gov/27899674
https://pubmed.ncbi.nlm.nih.gov/27899674
Autor:
David I. Hurwitz, Christopher J. Lanczycki, Noreen R. Gonzales, Stephen H. Bryant, Farideh Chitsaz, James S. Song, Marc Gwadz, Gabriele H. Marchler, Narmada Thanki, Lewis Y. Geer, Dachuan Zhang, Renata C. Geer, Fu Lu, Chanjuan Zheng, Roxanne A. Yamashita, Myra K. Derbyshire, Aron Marchler-Bauer, Shennan Lu
Publikováno v:
Nucleic Acids Research
CDD, the Conserved Domain Database, is part of NCBI’s Entrez query and retrieval system and is also accessible via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml. CDD provides annotation of protein sequences with the location of conserved doma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::787c383621913c688df271dad84f6428
http://europepmc.org/articles/PMC3531192
http://europepmc.org/articles/PMC3531192
Autor:
Fu-Ping Lu, Carol DeWeese-Scott, John B. Anderson, James S. Song, Christopher J. Lanczycki, Zhaoxi Ke, Farideh Chitsaz, John D. Jackson, Mikhail Mullokandov, Roxanne A. Yamashita, Aron Marchler-Bauer, Marina V. Omelchenko, Chanjuan Zheng, Naigong Zhang, Noreen R. Gonzales, Marc Gwadz, Cynthia L. Robertson, Stephen H. Bryant, Gabriele H. Marchler, Jessica H. Fong, David I. Hurwitz, Lewis Y. Geer, Narmada Thanki, Renata C. Geer, Dachuan Zhang, Myra K. Derbyshire, Shennan Lu
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints. CDD includes manually curated domain models that make
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f2c026177984fae9f84c055b453ce27
http://europepmc.org/articles/PMC3013737
http://europepmc.org/articles/PMC3013737
Autor:
Farideh Chitsaz, Mikhail Mullokandov, Stephen H. Bryant, Siqian He, Jessica H. Fong, John B. Anderson, Fu-er Lu, Asba Tasneem, Myra K. Derbyshire, David I. Hurwitz, Renata C. Geer, Roxanne A. Yamashita, Carol DeWeese-Scott, James S. Song, Christopher J. Lanczycki, Zhaoxi Ke, Cynthia A. Liebert, Shennan Lu, Chunlei Liu, Dachuan Zhang, Noreen R. Gonzales, Naigong Zhang, Narmada Thanki, Lewis Y. Geer, John D. Jackson, Gabriele H. Marchler, Aron Marchler-Bauer, Marc Gwadz
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. The collection can be accessed at http://www.ncbi.nlm.nih.gov
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::488d1e0beb16392149316a39dcaa839f
https://doi.org/10.1093/nar/gkn845
https://doi.org/10.1093/nar/gkn845
Autor:
James S. Song, Gabriele H. Marchler, Carol DeWeese-Scott, Jodie J. Yin, Dmitri M. Krylov, John B. Anderson, Myra K. Derbyshire, Narmada Thanki, Aron Marchler-Bauer, Christopher J. Lanczycki, Zhaoxi Ke, Mikhail Mullokandov, Roxanne A. Yamashita, Chunlei Liu, John D. Jackson, Cynthia A. Liebert, Siqian He, Noreen R. Gonzales, Shennan Lu, Marc Gwadz, Fu Lu, Stephen H. Bryant, Luning Hao, David I. Hurwitz, Dachuan Zhang
Publikováno v:
Nucleic Acids Research
The conserved domain database (CDD) is part of NCBI's Entrez database system and serves as a primary resource for the annotation of conserved domain footprints on protein sequences in Entrez. Entrez's global query interface can be accessed at http://
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e9e3f3d64f985ae50fd51f266e648e60
https://doi.org/10.1093/nar/gkl951
https://doi.org/10.1093/nar/gkl951