Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Nobuyuki P. Aoki"'
Autor:
Miguel A. Rojas-Macias, Julien Mariethoz, Peter Andersson, Chunsheng Jin, Vignesh Venkatakrishnan, Nobuyuki P. Aoki, Daisuke Shinmachi, Christopher Ashwood, Katarina Madunic, Tao Zhang, Rebecca L. Miller, Oliver Horlacher, Weston B. Struwe, Yu Watanabe, Shujiro Okuda, Fredrik Levander, Daniel Kolarich, Pauline M. Rudd, Manfred Wuhrer, Carsten Kettner, Nicolle H. Packer, Kiyoko F. Aoki-Kinoshita, Frédérique Lisacek, Niclas G. Karlsson
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Glycomics is gaining momentum in basic, translational and clinical research. Here, the authors review current reporting standards and analysis tools for mass-spectrometry-based glycomics, and propose an e-infrastructure for standardized reporting and
Externí odkaz:
https://doaj.org/article/8f37916676f94c028d37e7e01c2da22a
Autor:
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Publikováno v:
F1000Research, Vol 9 (2020)
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss i
Externí odkaz:
https://doaj.org/article/6d102248ecd24affbea7a5223da6573a
Autor:
Tamiko Ono, Masaaki Shiota, Daisuke Shinmachi, Nobuyuki P. Aoki, Masaaki Matsubara, Shinichiro Tsuchiya, Akihiro Fujita, Issaku Yamada, Kiyoko F. Aoki-Kinoshita
Publikováno v:
Nucleic Acids Research
Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of
Autor:
Takatomo Fujisawa, Shujiro Okuda, Rutger A. Vos, Yuki Naito, Benedict Paten, Toshihisa Takagi, Atsushi Fukushima, Issaku Yamada, Kouji Kozaki, Atsuko Yamaguchi, Shin Kawano, Jeremy Nguyen-Xuan, Toshiaki Katayama, Tudor Groza, Takeru Nakazato, Tazro Ohta, Toshiaki Tokimatsu, Akira R. Kinjo, Tsuyosi Tabata, Bruno Vieira, Kotone Itaya, Eric W. Deutsch, Evan E Bolton, Kenjiro Kosaki, Yasunori Yamamoto, Sadahiro Kumagai, Soichi Ogishima, Pjotr Prins, Mark Wilkinson, Núria Queralt-Rosinach, Colin Hercus, Philip Prathipati, Alexander Garcia, Hidemasa Bono, Shuichi Kawashima, Jerven Bolleman, Yuki Moriya, Chih-Hsuan Wei, Ryota Yamanaka, Masaaki Matsubara, Akiyasu C. Yoshizawa, Jesualdo Tomás Fernández-Breis, Naoki Nishida, Thomas Lütteke, Hiroyo Nishide, Jin-Dong Kim, Kees Burger, Kevin Bretonnel Cohen, Nobuyuki P. Aoki, Kozo Nishida, Joe Miyamoto, Michel Dumontier, Robert Hoehndorf, Attayeb Mohsen, Peter Amstutz, Nick Juty, Raoul J. P. Bonnal, Kieron Taylor, Hiroyuki Mishima, Naohisa Goto, Masaaki Kotera, Tatsuya Kushida, Hiroshi Mori, Ikuo Uchiyama, Takeshi Kawashima, Kazutoshi Yoshitake, Jean-Luc Perret, Kazuharu Arakawa, Jee-Hyub Kim, Daisuke Shinmachi, Shinya Suzuki, Mark Thompson, Terue Takatsuki, Erick Antezana, Hongyan Wu, Gang Fu, Hirokazu Chiba
Publikováno v:
F1000Research, 9. F1000 Research Ltd.
F1000Research
F1000Research
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69bc30c9d74c1248bb68af22746ba6f9
https://cris.maastrichtuniversity.nl/en/publications/f3a06590-62bd-47fc-bf50-b89db8f73b70
https://cris.maastrichtuniversity.nl/en/publications/f3a06590-62bd-47fc-bf50-b89db8f73b70
Autor:
Masaaki Matsubara, Hisashi Narimatsu, Kiyoko F. Aoki-Kinoshita, Issaku Yamada, Nobuyuki P. Aoki
Publikováno v:
Journal of Chemical Information and Modeling. 57:632-637
Accurate representation of structural ambiguity is important for storing carbohydrate structures containing varying levels of ambiguity in the literature and databases. Although many representations for carbohydrates have been developed in the past,
Autor:
Toshisuke Kawasaki, Daisuke Shinmachi, Noriaki Fujita, Elena Solovieva, Shinichiro Tsuchiya, Shujiro Okuda, Masaaki Matsubara, Nobuyuki P. Aoki, Yoshinori Suzuki, Hisashi Narimatsu, Toshihide Shikanai, Akihiro Fujita, Issaku Yamada, Kiyoko F. Aoki-Kinoshita
Publikováno v:
Perspectives in Science, Vol 11, Iss C, Pp 18-23 (2017)
Summary The Integrated Life Science Database Project of Japan funded a group of glycoscientists to carry out a project to integrate glycoscience databases using Semantic Web technologies. As a continuation of the previous project period, the Japan Co
Autor:
Hisashi Narimatsu, Shujiro Okuda, Yu Watanabe, Noriaki Fujita, Daisuke Shinmachi, Nobuyuki P. Aoki, Issaku Yamada, Shinichiro Tsuchiya, Masae Hosoda, Akihiro Fujita, Masaaki Shiota, Tamiko Ono, Hiroyuki Kaji, Kiyoko F. Aoki-Kinoshita, Kiyohiko Angata
Publikováno v:
Nature Methods. 17:649-650
Autor:
Christopher Ashwood, Manfred Wuhrer, Shujiro Okuda, Nicolle H. Packer, Carsten Kettner, Peter Andersson, Weston B. Struwe, Kiyoko F. Aoki-Kinoshita, Miguel A. Rojas-Macias, Rebecca L. Miller, Katarina Madunić, Oliver Horlacher, Niclas G. Karlsson, Julien Mariethoz, Pauline M. Rudd, Chunsheng Jin, Tao Zhang, Fredrik Levander, Daniel Kolarich, Nobuyuki P. Aoki, Frédérique Lisacek, Vignesh Venkatakrishnan, Daisuke Shinmachi, Yu Watanabe
Publikováno v:
Nature Communications, Vol. 10, No 1 (2019)
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Nature Communications
Nature Communications, 10
Rojas-Macias, M A, Mariethoz, J, Andersson, P, Jin, C, Venkatakrishnan, V, Aoki, N P, Shinmachi, D, Ashwood, C, Madunic, K, Zhang, T, Miller, R L, Horlacher, O, Struwe, W B, Watanabe, Y, Okuda, S, Levander, F, Kolarich, D, Rudd, P M, Wuhrer, M, Kettner, C, Packer, N H, Aoki-Kinoshita, K F, Lisacek, F & Karlsson, N G 2019, ' Towards a standardized bioinformatics infrastructure for N-and O-glycomics ', Nature Communications, vol. 10, no. 1, 3275 . https://doi.org/10.1038/s41467-019-11131-x
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Nature Communications
Nature Communications, 10
Rojas-Macias, M A, Mariethoz, J, Andersson, P, Jin, C, Venkatakrishnan, V, Aoki, N P, Shinmachi, D, Ashwood, C, Madunic, K, Zhang, T, Miller, R L, Horlacher, O, Struwe, W B, Watanabe, Y, Okuda, S, Levander, F, Kolarich, D, Rudd, P M, Wuhrer, M, Kettner, C, Packer, N H, Aoki-Kinoshita, K F, Lisacek, F & Karlsson, N G 2019, ' Towards a standardized bioinformatics infrastructure for N-and O-glycomics ', Nature Communications, vol. 10, no. 1, 3275 . https://doi.org/10.1038/s41467-019-11131-x
The mass spectrometry (MS)-based analysis of free polysaccharides and glycans released from proteins, lipids and proteoglycans increasingly relies on databases and software. Here, we review progress in the bioinformatics analysis of protein-released
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6903e5dd7264948a1864764107d450a7
https://archive-ouverte.unige.ch/unige:132483
https://archive-ouverte.unige.ch/unige:132483
e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines
Autor:
Peter Andersson, Tao Zhang, Manfred Wuhrer, Christopher Ashwood, Daniel Kolarich, Nobuyuki P. Aoki, Chunsheng Jin, Frédérique Lisacek, Miguel A. Rojas-Macias, Carsten Kettner, Katarina Madunić, Pauline M. Rudd, Venkatakrishnan, Oliver Horlacher, Rebecca L. Miller, Kiyoko F. Aoki-Kinoshita, Fredrik Levander, Daisuke Shinmachi, Nicolle H. Packer, Niclas G. Karlsson, Julien Mariethoz, Weston B. Struwe
Glycomics targets released glycans from proteins, lipids and proteoglycans. High throughput glycomics is based on mass spectrometry (MS) that increasingly depends on exchange of data with databases and the use of software. This requires an agreed for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e20cb05fe22d34e27360b7ed300f45a2
Autor:
Shujiro Okuda, Rene Ranzinger, Kiyoko F. Aoki-Kinoshita, Sanjay Agravat, KW Moreman, Akihiro Fujita, J M Pierce, N Fujita, Masaaki Matsubara, Richard D. Cummings, Toshisuke Kawasaki, Daisuke Shinmachi, Elena Solovieva, Issaku Yamada, Nobuyuki P. Aoki, Stuart M. Haslam, Sena Arpinar, Joseph Zaia, Hisashi Narimatsu, GM Hart, Yasuhiko Suzuki, William S. York, Toshihide Shikanai, Shinichiro Tsuchiya
Publikováno v:
Glycobiology. 25:1207-1310