Zobrazeno 1 - 10
of 117
pro vyhledávání: '"Nobuo Shimamoto"'
Autor:
Takashi Kinebuchi, Nobuo Shimamoto
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-8 (2021)
Abstract Several DNA-binding proteins show the affinities for their specific DNA sites that positively depend on the length of DNA harboring the sites, i. e. antenna effect. DNA looping can cause the effect for proteins with two or more DNA binding s
Externí odkaz:
https://doaj.org/article/4eca2dec88a64cbd952c2513c9843ae3
Autor:
Nobuo Shimamoto
Publikováno v:
Biomolecules, Vol 12, Iss 1, p 28 (2021)
When a reaction is accompanied by a change with the speed close to or slower than the reaction rate, a circulating reaction flow can exist among the reaction states in the macroscopic stationary state. If the accompanying change were at equilibrium i
Externí odkaz:
https://doaj.org/article/3330936f012741ff933cab62b49318b9
Autor:
Nobuo Shimamoto, Masahiko Imashimizu
Publikováno v:
Biomolecules, Vol 11, Iss 1, p 32 (2020)
The study of transcription and its regulation is an interdisciplinary field that is closely connected with genetics, structural biology, and reaction theory. Among these, although less attention has been paid to reaction theory, it is becoming increa
Externí odkaz:
https://doaj.org/article/bf642e8256d447379dd21e37377faebb
Autor:
Masahiko Imashimizu, Yuji Tokunaga, Ariel Afek, Hiroki Takahashi, Nobuo Shimamoto, David B. Lukatsky
Publikováno v:
Biomolecules, Vol 10, Iss 9, p 1299 (2020)
In the process of transcription initiation by RNA polymerase, promoter DNA sequences affect multiple reaction pathways determining the productivity of transcription. However, the question of how the molecular mechanism of transcription initiation dep
Externí odkaz:
https://doaj.org/article/3c0b6fc2bb6046b39b93029889027212
Autor:
Marcel Geertz, Andrew Travers, Sanja Mehandziska, Patrick Sobetzko, Sarath Chandra Janga, Nobuo Shimamoto, Georgi Muskhelishvili
Publikováno v:
mBio, Vol 2, Iss 4 (2011)
ABSTRACT In growing bacterial cells, the global reorganization of transcription is associated with alterations of RNA polymerase composition and the superhelical density of the DNA. However, the existence of any regulatory device coordinating these c
Externí odkaz:
https://doaj.org/article/7b8455f11d34455190918d449e0b0058
Publikováno v:
Nanoscale. 14:13315-13323
The chemical ratchet, a mechanism indifferent to detailed balance, is evidenced by a single-molecule experiment involving the binding of a bacterial repressor to its operator.
Autor:
Nobuo Shimamoto
Publikováno v:
Biomolecules, Vol 12, Iss 28, p 28 (2022)
Biomolecules
Biomolecules
When a reaction is accompanied by a change with the speed close to or slower than the reaction rate, a circulating reaction flow can exist among the reaction states in the macroscopic stationary state. If the accompanying change were at equilibrium i
Autor:
Nobuo Shimamoto
Publikováno v:
SSRN Electronic Journal.
Autor:
Nobuo Shimamoto, Masahiko Imashimizu
Publikováno v:
Biomolecules, Vol 11, Iss 32, p 32 (2021)
Biomolecules
Biomolecules
The study of transcription and its regulation is an interdisciplinary field that is closely connected with genetics, structural biology, and reaction theory. Among these, although less attention has been paid to reaction theory, it is becoming increa
Publikováno v:
J Mol Biol
RNA polymerase can cleave a phosphodiester bond at the 3′ end of a nascent RNA in the presence of pyrophosphate producing NTP. Pyrophosphorolysis has been characterized during elongation steps of transcription where its rate is significantly slower