Peer Review #2 of 'An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella (v0.2)'

Autor: NJ Loman

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::9b4630742508e7d3c85f09ac5ce4c947
https://doi.org/10.7287/peerj.620v0.2/reviews/2

Peer Review #2 of 'PhyloSift: phylogenetic analysis of genomes and metagenomes (v0.1)'

Autor: NJ Loman

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::31c87698c86325a9c9ac04baa68231b3
https://doi.org/10.7287/peerj.243v0.1/reviews/2

Staphylococcal species heterogeneity in the nasal microbiome following antibiotic prophylaxis revealed by tuf gene deep sequencing

Autor: Cl, Mcmurray, Kj, Hardy, Szymon Calus, Nj, Loman, Pm, Hawkey

Publikováno v: Europe PubMed Central

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::a48ad3c69a5286ed4f0892446c3cc453
http://europepmc.org/abstract/med/27912796

Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes.

Autor: Mirza JD; Institute of Inflammation and Ageing, University of Birmingham, Birmingham, UK.; Department of Biosciences, University of Birmingham, Birmingham, UK., de Oliveira Guimarães L; Instituto Pasteur, São Paulo, Brazil., Wilkinson S; Department of Biosciences, University of Birmingham, Birmingham, UK., Rocha EC; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Bertanhe M; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Helfstein VC; Instituto Pasteur, São Paulo, Brazil., de-Deus JT; Instituto Pasteur, São Paulo, Brazil., Claro IM; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.; MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, UK., Cumley N; Department of Biosciences, University of Birmingham, Birmingham, UK., Quick J; Department of Biosciences, University of Birmingham, Birmingham, UK., Faria NR; MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, UK., Sabino EC; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Kirchgatter K; Instituto Pasteur, São Paulo, Brazil.; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Loman NJ; Department of Biosciences, University of Birmingham, Birmingham, UK.

Publikováno v: Microbial genomics [Microb Genom] 2024 Jan; Vol. 10 (1).

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.

Autor: Tsui JL; Department of Biology, University of Oxford, Oxford, UK., McCrone JT; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.; Helix, San Mateo, CA 94401, USA., Lambert B; College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, UK., Bajaj S; Department of Biology, University of Oxford, Oxford, UK., Inward RPD; Department of Biology, University of Oxford, Oxford, UK., Bosetti P; Institut Pasteur, Université Paris Cité, CNRS, Paris, France., Pena RE; Department of Biology, University of Oxford, Oxford, UK., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Hill V; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06511, USA., Zarebski AE; Department of Biology, University of Oxford, Oxford, UK., Peacock TP; Department of Infectious Disease, Imperial College London, London, UK.; UK Health Security Agency, London, UK., Liu L; Google Research, Mountain View, CA 94043, USA., Wu N; Google Research, Mountain View, CA 94043, USA., Davis M; BlueDot, Toronto, Canada., Bogoch II; Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, Canada., Khan K; BlueDot, Toronto, Canada.; Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, Canada., Kall M; UK Health Security Agency, London, UK., Abdul Aziz NIB; UK Health Security Agency, London, UK., Colquhoun R; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK., O'Toole Á; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK., Jackson B; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK., Dasgupta A; Department of Biology, University of Oxford, Oxford, UK.; Doctoral Training Centre, University of Oxford, Oxford, UK., Wilkinson E; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., de Oliveira T; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Connor TR; Pathogen Genomics Unit, Public Health Wales NHS Trust, Cardiff, UK.; School of Biosciences, The Sir Martin Evans Building, Cardiff University, Cardiff, UK.; Quadram Institute, Norwich, UK., Loman NJ; Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK., Colizza V; Sorbonne Université, INSERM, Institut Pierre Louis d'Épidémiologie et de Santé Publique (IPLESP), Paris, France., Fraser C; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK., Volz E; MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK., Ji X; Department of Mathematics, Tulane University, New Orleans, LA 70118, USA., Gutierrez B; Department of Biology, University of Oxford, Oxford, UK.; School of Biological and Environmental Sciences, Universidad San Francisco de Quito USFQ, Quito, Ecuador., Chand M; UK Health Security Agency, London, UK., Dellicour S; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Bruxelles, Belgium.; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Cauchemez S; Institut Pasteur, Université Paris Cité, CNRS, Paris, France., Raghwani J; Department of Biology, University of Oxford, Oxford, UK.; Department of Pathobiology and Population Science, Royal Veterinary College, London, UK., Suchard MA; Departments of Biostatistics, Biomathematics and Human Genetics, University of California, Los Angeles, CA 90095, USA., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Rambaut A; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK., Pybus OG; Department of Biology, University of Oxford, Oxford, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK.; Department of Pathobiology and Population Science, Royal Veterinary College, London, UK., Kraemer MUG; Department of Biology, University of Oxford, Oxford, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK.

Publikováno v: Science (New York, N.Y.) [Science] 2023 Jul 21; Vol. 381 (6655), pp. 336-343. Date of Electronic Publication: 2023 Jul 20.