Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Nils, Krietenstein"'
Autor:
Elisa Oberbeckmann, Nils Krietenstein, Vanessa Niebauer, Yingfei Wang, Kevin Schall, Manuela Moldt, Tobias Straub, Remo Rohs, Karl-Peter Hopfner, Philipp Korber, Sebastian Eustermann
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-19 (2021)
DNA sequence preferences or statistical positioning of histones has not explained genomic patterns of nucleosome organisation in vivo. Here, the authors establish DNA shape/mechanics as key elements that have evolved together with binding sites of DN
Externí odkaz:
https://doaj.org/article/bbe5da9e664a4906b57c14cdaabf9842
Autor:
Elisa Oberbeckmann, Michael Roland Wolff, Nils Krietenstein, Mark Heron, Andrea Schmid, Tobias Straub, Ulrich Gerland, Philipp Korber
Publikováno v:
Chromatin Accessibility ISBN: 9781071628980
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c1979565a74d6096ea7a09302114e426
https://doi.org/10.1007/978-1-0716-2899-7_9
https://doi.org/10.1007/978-1-0716-2899-7_9
Autor:
Charles Danko, Gilad Barshad, James Lewis, Alexandra Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward Rice, Oliver J. Rando, Anna-Katerina Hadjantonakis
How enhancers control target gene expression over long genomic distances remains an important unsolved problem. Here we studied enhancer-promoter contact architecture and communication by integrating data from nucleosome-resolution genomic contact ma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::07a93dc28c6f0332c22cf8b86e79249c
https://doi.org/10.21203/rs.3.rs-1851612/v1
https://doi.org/10.21203/rs.3.rs-1851612/v1
Autor:
Gilad Barshad, James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward J. Rice, Oliver J. Rando, Anna-Katerina Hadjantonakis, Charles G. Danko
How enhancers control target gene expression over long genomic distances remains an important unsolved problem. Here we studied enhancer-promoter contact architecture and communication by integrating data from nucleosome-resolution genomic contact ma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c80ddac8f8f004fea77a420b41fae344
https://doi.org/10.1101/2022.07.07.499190
https://doi.org/10.1101/2022.07.07.499190
Autor:
Nils, Krietenstein, Oliver J, Rando
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2458
Chromosome Conformation Capture (3C) methods are a family of sequencing-based assays to measure the three-dimensional structure of genomes, with Hi-C as the most prominent method in widespread use. The Micro-C-XL protocol is technical variant that im
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::983a2ff7d6885cde3ed88b34e4035ea3
https://pubmed.ncbi.nlm.nih.gov/35103975
https://pubmed.ncbi.nlm.nih.gov/35103975
Autor:
Nils Krietenstein, Oliver J. Rando
Publikováno v:
Methods in Molecular Biology ISBN: 9781071621394
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3b639739bb97babb2969e3187e1effe1
https://doi.org/10.1007/978-1-0716-2140-0_17
https://doi.org/10.1007/978-1-0716-2140-0_17
Autor:
Philipp Korber, Mark Heron, Nils Krietenstein, Helmut Blum, Stefan Krebs, Jessica L Ellins, Andrea Schmid, Elisa Oberbeckmann, Michael Roland Wolff, Ulrich Gerland
Publikováno v:
Genome Research. 29:1996-2009
Mapping of nucleosomes, the basic DNA packaging unit in eukaryotes, is fundamental for understanding genome regulation because nucleosomes modulate DNA access by their positioning along the genome. A cell-population nucleosome map requires two observ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::642fe7d2add74f472b3c2738cd850fdc
https://doi.org/10.1101/gr.253419.119
https://doi.org/10.1101/gr.253419.119
Autor:
René Maehr, Hui Mao, Job Dekker, Johan H. Gibcus, Ryan M.J. Genga, Leonid A. Mirny, Ankita Nand, Oliver J. Rando, Sergey V. Venev, Liyan Yang, Krishna Mohan Parsi, Marlies E. Oomen, Nils Krietenstein, Sameer Abraham, Betul Akgol Oksuz, Hakan Ozadam
Publikováno v:
Nature Methods
Chromosome conformation capture (3C) assays are used to map chromatin interactions genome-wide. Chromatin interaction maps provide insights into the spatial organization of chromosomes and the mechanisms by which they fold. Hi-C and Micro-C are widel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::59d27ba7e69a87d6222e4a9730e95c98
https://doi.org/10.1101/2020.12.26.424448
https://doi.org/10.1101/2020.12.26.424448
Autor:
Andrew Seeber, Antonin Morillon, Susan M. Gasser, Ugo Szachnowski, Marie-Bénédicte Barrault, Romain Forey, Cécile Ducrot, Jérôme Poli, Armelle Lengronne, Antoine Barthe, Julie Soutourina, Oliver J. Rando, Jennifer A. Cobb, Michel Werner, Nils Krietenstein, Mireille Tittel-Elmer, Maxime Wery, Philippe Pasero, Magdalena Skrzypczak, Karine Dubrana, Krzysztof Ginalski, Maga Rowicka
Publikováno v:
Mol Cell
Molecular Cell
Molecular Cell, Elsevier, 2020, ⟨10.1016/j.molcel.2020.11.010⟩
Molecular Cell
Molecular Cell, Elsevier, 2020, ⟨10.1016/j.molcel.2020.11.010⟩
Mre11-Rad50-Xrs2 (MRX) is a highly conserved complex with key roles in various aspects of DNA repair. Here, we report a new function for MRX in limiting transcription in budding yeast. We show that MRX interacts physically and colocalizes on chromati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce9b78dc991ade7b7fd99baabfa3cd7d
https://europepmc.org/articles/PMC8112817/
https://europepmc.org/articles/PMC8112817/
Autor:
Oliver J. Rando, Nils Krietenstein
Publikováno v:
Current opinion in geneticsdevelopment. 61
The proper organization of the physical genome is essential to facilitate DNA-templated processes from transcription to replication to DNA repair. Genome-wide studies over the past two decades have provided us with a detailed understanding of the pos
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6345d534453cf1c2bcc0362f06872869
https://pubmed.ncbi.nlm.nih.gov/32305817
https://pubmed.ncbi.nlm.nih.gov/32305817