Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling

Autor: Suwisa, Kaewphan, Kai, Hakala, Niko, Miekka, Tapio, Salakoski, Filip, Ginter

Publikováno v: Database : the journal of biological databases and curation. 2018

We present a system for automatically identifying a multitude of biomedical entities from the literature. This work is based on our previous efforts in the BioCreative VI: Interactive Bio-ID Assignment shared task in which our system demonstrated sta

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::297165e5dcacac15b2b3b1c84e977de6
https://pubmed.ncbi.nlm.nih.gov/30239666

Universal Dependencies 2.2

Autor: Joakim Nivre, Mitchell Abrams, Željko Agić, Lars Ahrenberg, Lene Antonsen, Maria Jesus Aranzabe, Gashaw Arutie, Masayuki Asahara, Luma Ateyah, Mohammed Attia, Aitziber Atutxa, Liesbeth Augustinus, Elena Badmaeva, Miguel Ballesteros, Esha Banerjee, Sebastian Bank, Verginica Barbu Mititelu, John Bauer, Sandra Bellato, Kepa Bengoetxea, Riyaz Ahmad Bhat, Erica Biagetti, Eckhard Bick, Rogier Blokland, Victoria Bobicev, Carl Börstell, Cristina Bosco, Gosse Bouma, Sam Bowman, Adriane Boyd, Aljoscha Burchardt, Marie Candito, Bernard Caron, Gauthier Caron, Gülşen Cebiroğlu Eryiğit, Celano, Giuseppe G. A., Savas Cetin, Fabricio Chalub, Jinho Choi, Yongseok Cho, Jayeol Chun, Silvie Cinková, Aurélie Collomb, Çağrı Çöltekin, Miriam Connor, Marine Courtin, Elizabeth Davidson, Marie-Catherine Marneffe, Valeria Paiva, Arantza Ilarraza, Carly Dickerson, Peter Dirix, Kaja Dobrovoljc, Timothy Dozat, Kira Droganova, Puneet Dwivedi, Marhaba Eli, Ali Elkahky, Binyam Ephrem, Tomaž Erjavec, Aline Etienne, Richárd Farkas, Hector Fernandez Alcalde, Jennifer Foster, Cláudia Freitas, Katarína Gajdošová, Daniel Galbraith, Marcos Garcia, Moa Gärdenfors, Kim Gerdes, Filip Ginter, Iakes Goenaga, Koldo Gojenola, Memduh Gökırmak, Yoav Goldberg, Xavier Gómez Guinovart, Berta Gonzáles Saavedra, Matias Grioni, Normunds Grūzītis, Bruno Guillaume, Céline Guillot-Barbance, Nizar Habash, Jan Hajič, Jan Hajič Jr., Linh Hà Mỹ, Na-Rae Han, Kim Harris, Dag Haug, Barbora Hladká, Jaroslava Hlaváčová, Florinel Hociung, Petter Hohle, Jena Hwang, Radu Ion, Elena Irimia, Tomáš Jelínek, Anders Johannsen, Fredrik Jørgensen, Hüner Kaşıkara, Sylvain Kahane, Hiroshi Kanayama, Jenna Kanerva, Tolga Kayadelen, Václava Kettnerová, Jesse Kirchner, Natalia Kotsyba, Simon Krek, Sookyoung Kwak, Veronika Laippala, Lorenzo Lambertino, Tatiana Lando, Septina Dian Larasati, Alexei Lavrentiev, John Lee, Phương Lê Hồng, Alessandro Lenci, Saran Lertpradit, Herman Leung, Cheuk Ying Li, Josie Li, Keying Li, Kyungtae Lim, Nikola Ljubešić, Olga Loginova, Olga Lyashevskaya, Teresa Lynn, Vivien Macketanz, Aibek Makazhanov, Michael Mandl, Christopher Manning, Ruli Manurung, Cătălina Mărănduc, David Mareček, Katrin Marheinecke, Hector Martinez Alonso, André Martins, Jan Mašek, Yuji Matsumoto, Ryan Mcdonald, Gustavo Mendonça, Niko Miekka, Anna Missilä, Cătălin Mititelu, Yusuke Miyao, Simonetta Montemagni, Amir More, Laura Moreno Romero, Shinsuke Mori, Bjartur Mortensen, Bohdan Moskalevskyi, Kadri Muischnek, Yugo Murawaki, Kaili Müürisep, Pinkey Nainwani, Juan Ignacio Navarro Horñiacek, Anna Nedoluzhko, Gunta Nešpore-Bērzkalne, Lương Nguyễn Thị, Huyền Nguyễn Thị Minh, Vitaly Nikolaev, Rattima Nitisaroj, Hanna Nurmi, Stina Ojala, Adédayọ̀ Olúòkun, Mai Omura, Petya Osenova, Robert Östling, Lilja Øvrelid, Niko Partanen, Elena Pascual, Marco Passarotti, Agnieszka Patejuk, Siyao Peng, Cenel-Augusto Perez, Guy Perrier, Slav Petrov, Jussi Piitulainen, Emily Pitler, Barbara Plank, Thierry Poibeau, Martin Popel, Lauma Pretkalniņa, Sophie Prévost, Prokopis Prokopidis, Adam Przepiórkowski, Tiina Puolakainen, Sampo Pyysalo, Andriela Rääbis, Alexandre Rademaker, Loganathan Ramasamy, Taraka Rama, Carlos Ramisch, Vinit Ravishankar, Livy Real, Siva Reddy, Georg Rehm, Michael Rießler, Larissa Rinaldi, Laura Rituma, Luisa Rocha, Mykhailo Romanenko, Rudolf Rosa, Davide Rovati, Valentin Roșca, Olga Rudina, Shoval Sadde, Shadi Saleh, Tanja Samardžić, Stephanie Samson, Manuela Sanguinetti, Baiba Saulīte, Yanin Sawanakunanon, Nathan Schneider, Sebastian Schuster, Djamé Seddah, Wolfgang Seeker, Mojgan Seraji, Mo Shen, Atsuko Shimada, Muh Shohibussirri, Dmitry Sichinava, Natalia Silveira, Maria Simi, Radu Simionescu, Katalin Simkó, Mária Šimková, Kiril Simov, Aaron Smith, Isabela Soares-Bastos, Antonio Stella, Milan Straka, Jana Strnadová, Alane Suhr, Umut Sulubacak, Zsolt Szántó, Dima Taji, Yuta Takahashi, Takaaki Tanaka, Isabelle Tellier, Trond Trosterud, Anna Trukhina, Reut Tsarfaty, Francis Tyers, Sumire Uematsu, Zdeňka Urešová, Larraitz Uria, Hans Uszkoreit, Sowmya Vajjala, Daniel Niekerk, Gertjan Noord, Viktor Varga, Veronika Vincze, Lars Wallin, Jonathan North Washington, Seyi Williams, Mats Wirén, Tsegay Woldemariam, Tak-Sum Wong, Chunxiao Yan, Yavrumyan, Marat M., Zhuoran Yu, Zdeněk Žabokrtský, Amir Zeldes, Daniel Zeman, Manying Zhang, Hanzhi Zhu

Publikováno v: HAL

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::04d7c78ffe9f0193046bf75f5911f48d
https://hal.archives-ouvertes.fr/hal-01930733