Zobrazeno 1 - 10
of 35
pro vyhledávání: '"Nikita, Alexeev"'
Publikováno v:
BMC Bioinformatics, Vol 21, Iss S6, Pp 1-20 (2020)
Abstract Background Integrative network methods are commonly used for interpretation of high-throughput experimental biological data: transcriptomics, proteomics, metabolomics and others. One of the common approaches is finding a connected subnetwork
Externí odkaz:
https://doaj.org/article/8b92b75fa1d047f188e275aea01934f9
Publikováno v:
BMC Bioinformatics, Vol 20, Iss S20, Pp 1-11 (2019)
Abstract Background Many cancer genomes are extensively rearranged with highly aberrant chromosomal karyotypes. Structural and copy number variations in cancer genomes can be determined via abnormal mapping of sequenced reads to the reference genome.
Externí odkaz:
https://doaj.org/article/31a461752eef4f3e97d117ec5f656064
Autor:
Zaira Seferbekova, Alexey Zabelkin, Yulia Yakovleva, Robert Afasizhev, Natalia O. Dranenko, Nikita Alexeev, Mikhail S. Gelfand, Olga O. Bochkareva
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Shigella are pathogens originating within the Escherichia lineage but frequently classified as a separate genus. Shigella genomes contain numerous insertion sequences (ISs) that lead to pseudogenisation of affected genes and an increase of non-homolo
Externí odkaz:
https://doaj.org/article/4438dad56665413587462bd558b18f46
Autor:
Nikita Alexeev
Publikováno v:
Apparatus. Film, Media and Digital Cultures of Central and Eastern Europe (2020)
Nikita Alekseev`s article.
Externí odkaz:
https://doaj.org/article/e2bcc32506d74913ba5cf2133a11477f
Autor:
Nikita Alexeev, Max A. Alekseyev
Publikováno v:
BMC Genomics, Vol 18, Iss S4, Pp 1-9 (2017)
Abstract Background The ability to estimate the evolutionary distance between extant genomes plays a crucial role in many phylogenomic studies. Often such estimation is based on the parsimony assumption, implying that the distance between two genomes
Externí odkaz:
https://doaj.org/article/96e5f5c14b734d16b7db618315bb2d71
Publikováno v:
Bioinformatics. 36:2993-3003
Motivation One of the key computational problems in comparative genomics is the reconstruction of genomes of ancestral species based on genomes of extant species. Since most dramatic changes in genomic architectures are caused by genome rearrangement
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0e418a9acae77cedd018ec0932aaab5
https://doi.org/10.1093/bioinformatics/btaa100
https://doi.org/10.1093/bioinformatics/btaa100
Publikováno v:
Comparative Genomics ISBN: 9783031062193
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7bef01519d401b21bea60ff79790b1a1
https://doi.org/10.1007/978-3-031-06220-9_13
https://doi.org/10.1007/978-3-031-06220-9_13
Publikováno v:
BMC Bioinformatics, Vol 20, Iss S20, Pp 1-11 (2019)
BMC Bioinformatics
BMC Bioinformatics
Background Many cancer genomes are extensively rearranged with highly aberrant chromosomal karyotypes. Structural and copy number variations in cancer genomes can be determined via abnormal mapping of sequenced reads to the reference genome. Recently
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::11e1584384983701c67b36dd282efb44
https://doaj.org/article/31a461752eef4f3e97d117ec5f656064
https://doaj.org/article/31a461752eef4f3e97d117ec5f656064
Autor:
James P Bernot, Pavel Avdeyev, Anton Zamyatin, Niklas Dreyer, Nikita Alexeev, Marcos Pérez-Losada, Keith A Crandall
Publikováno v:
Bernot, J P, Avdeyev, P, Zamyatin, A, Dreyer, N, Alexeev, N, Prez-Losada, M & Crandall, K A 2022, ' Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes ', GigaScience, vol. 11, giac021 . https://doi.org/10.1093/gigascience/giac021
Background The barnacles are a group of >2,000 species that have fascinated biologists, including Darwin, for centuries. Their lifestyles are extremely diverse, from free-swimming larvae to sessile adults, and even root-like endoparasites. Barnacles
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8a3ce7e1c5f416c4be13fd4138476ef8
https://pubmed.ncbi.nlm.nih.gov/35277961
https://pubmed.ncbi.nlm.nih.gov/35277961
Autor:
Dmitri Rozanov, Anton Cheltsov, Eduard Sergienko, Stefan Vasile, Vladislav Golubkov, Alexander E Aleshin, Trevor Levin, Elie Traer, Byron Hann, Julia Freimuth, Nikita Alexeev, Max A Alekseyev, Sergey P Budko, Hans Peter Bächinger, Paul Spellman
Publikováno v:
PLoS ONE, Vol 10, Iss 6, p e0129566 (2015)
A high throughput screen for compounds that induce TRAIL-mediated apoptosis identified ML100 as an active chemical probe, which potentiated TRAIL activity in prostate carcinoma PPC-1 and melanoma MDA-MB-435 cells. Follow-up in silico modeling and pro
Externí odkaz:
https://doaj.org/article/11106271d5e2407d9192a04d24ca2fe2