Biological and molecular characterization of Tomato spotted wilt orthotospovirus isolates from pepper cultivars with the resistance gene Tsw from Turkey

Autor: Selin Ceren Balsak, Nihal Buzkan

Publikováno v: Australasian Plant Pathology. 51:543-551

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::ace70fbe16fe64e6efdc845a2868afa9
https://doi.org/10.1007/s13313-022-00890-9

Detection and genetic diversity of Hop stunt viroid infecting Pistachio (Pistacia vera L.) trees in Turkey

Autor: Nihal Buzkan, Selin Ceren Balsak

Publikováno v: European Journal of Plant Pathology. 159:707-710

Hop stunt viroid (HSVd) infects a large number of woody plants such as grapevine, citrus, plum, peach, fig, mulberry, pear, pistachio, and almond. Pistachio (Pistacia vera L.) is an important crop in Turkey and very few reports described the presence

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2841d50b0ffe2b7465c059bdefd31926
https://doi.org/10.1007/s10658-020-02187-3

Toward a critical assessment of virus detection in plants

Autor: Thierry Candresse, Maher Al Rwahnih, Nicolas Fouillien, Nihal Buzkan, Sébastien Massart, Annelies Haegeman, Denis Kutnjak, Lucie Tamisier, Marie Lefebvre, Kristian Stevens, Kris De Jonghe, Paolo Margaria, Yoika Foucart, Michela Chiumenti, Jean Sebastien Reynard

Publikováno v: Peer Community In Genomics.

A recommendation of: Lucie Tamisier, Annelies Haegeman, Yoika Foucart, Nicolas Fouillien, Maher Al Rwahnih, Nihal Buzkan, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Marie Lefebvre, Paolo Margaria, Jean Sebastien Reynard, Kristian Stevens,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4e0495cbf09ce9e96e7304849f320333
https://doi.org/10.24072/pci.genomics.100007

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Autor: Amadou A. Sall, Christopher F. Basler, Gary P. Kobinger, Amy J. Lambert, Rodrigo Jardim, John V. da Graça, Yong-Zhen Zhang, Víctor Romanowski, Massimo Turina, John W. McCauley, Lin-Fa Wang, Paul A. Rota, Olga Dolnik, Juan Carlos de la Torre, Gabriele Neumann, Natalie J. Thornburg, Tomohide Natsuaki, Jin Won Song, Kartik Chandran, Carol D. Blair, Michael A. Drebot, Guohui Zhou, Rémi N. Charrel, Heather L. Wells, Ralf G. Dietzgen, Bernadett Pályi, Arnfinn Lodden Økland, Ian Crozier, Gael Kurath, Gilda B. Jonson, Robert R. Martin, Xuejie Yu, Anthony R. Fooks, Renato O. Resende, Ali Mirazimi, Bernadette G. van den Hoogen, Scott Adkins, Colin R. Parrish, Alexander Bukreyev, Anthony Griffiths, Timothy H. Hyndman, Peter Simmonds, Rachel Breyta, Zhìqiáng Wú, Ralf Dürrwald, Jorlan Fernandes, Biao Chen, Udo Hetzel, Alexandro Guterres, Jessica R. Spengler, Michael J. Buchmeier, Rayapati A. Naidu, Janusz T. Paweska, Keizō Tomonaga, Kamil Sarpkaya, Ivan V. Kuzmin, Jens H. Kuhn, Piet Maes, Marco Marklewitz, Masayuki Horie, Arvind Varsani, Shin-Yi Lee Marzano, Ursula J. Buchholz, Jean-Paul Gonzalez, Angelantonio Minafra, Daniela Alioto, Simon J. Anthony, Florian Pfaff, Brian H. Bird, Peter J. Walker, Robert A. Lamb, Noël Tordo, Rainer G. Ulrich, Sergio H. Marshall, Eric M. Leroy, Ayato Takada, Kirsten Spann, Xavier de Lamballerie, John M. Dye, Inmaculada Casas, Manuela Sironi, J. Christopher S. Clegg, Paul Brown, Dennis Rubbenstroth, Yan Liu, Márcio Roberto Teixeira Nunes, Tatjana Avšič-Županc, Martin Verbeek, Andrew J. Easton, Beatriz Navarro, Hideki Ebihara, Benhur Lee, Pierre Formenty, Qi Jin, Hideki Kondō, Eric Bergeron, Sébastien Massart, Daniel R. Perez, S. V. Alkhovsky, Charles H. Calisher, Anna Papa, Xīnglóu Yáng, José A. Navarro, Xifeng Wang, Taiyun Wei, Kim R. Blasdell, Lucie Dufkova, Renata Carvalho de Oliveira, Elba Regina Sampaio de Lemos, Nikos Vasilakis, Pedro Luis Ramos-González, Tong Zhang, Holly R. Hughes, Leonie Forth, Serpil Karadağ, F. Murilo Zerbini, Xueping Zhou, María Laura García, Tomáš Bartonička, Sandra Junglen, Aziz ul Rahman, Petra Straková, Karen E. Keller, William G. Dundon, Jiří Salát, Dexin Li, Jussi Hepojoki, Maria S. Salvato, Hui Wang, Justin Bahl, Bernd Hoffmann, Alberto M. R. Dávila, Jonathan S. Towner, Wénwén Liú, Mifang Liang, Yuri I. Wolf, Gaya K. Amarasinghe, Jianwei Wang, Alex Pauvolid-Corrêa, Anna Maria Vaira, Roy A. Hall, William Marciel de Souza, Thomas Briese, Felicity J. Burt, Valerian V. Dolja, Boris Klempa, Satu Hepojoki, Mengji Cao, Selma Gago-Zachert, Il-Ryong Choi, Rik L. de Swart, Jan Felix Drexler, Gabriel Robles Luna, Igor S. Lukashevich, Maria Minutolo, Amara Jambai, Nihal Buzkan, Steven B. Bradfute, Are Nylund, Ioannis E. Tzanetakis, Xiǎohóng Shí, Stephan Günther, Aura R. Garrison, Takahide Sasaya, Mart Krupovic, Victoria Wahl, Seiji Hongo, Matthew J. Ballinger, María A. Ayllón, Jonas Klingström, David M. Stone, Sead Sabanadzovic, Tracey Goldstein, George Fú Gāo, Aiah Gbakima, Norbert Nowotny, Vicente Pallás, Carina Andrea Reyes, W. Paul Duprex, Roger Hewson, Muhammad Zubair Shabbir, Sophie J. Smither, John V. Williams, Hans Peter Mühlbach, John Chamberlain, Yukio Shirako, Elke Mühlberger, Lies Laenen, Martin Beer, Jiànróng Lǐ, Giovanni P. Martelli, Gustavo Palacios, Sina Bavari, Natalya Yutin, Elena Dal Bó, Michele Digiaro, Jonathan A. Runstadler, John Hammond, Martin Schwemmle, Robert B. Tesh, Dirk Höper, Martin H. Groschup, Francesco Di Serio, Teemu Smura, Sheli R. Radoshitzky, Juliana Freitas-Astúa, Susan Payne, Dennis A. Bente, Anne Balkema-Buschmann, Adolfo García-Sastre, Eugene V. Koonin, Nicholas Di Paola, Bertus K. Rima, Mark D. Stenglein, Mohamed Hassan, Michela Chiumenti, Koray Ergünay, Patrick L. Di Bello, Ron A. M. Fouchier, Anna E. Whitfield, Toufic Elbeaino, Xin Yang, Nicole Mielke-Ehret, Jana Širmarová, Daniel Ruzek, Dàohóng Jiāng, Stanley L. Langevin, Sergey V. Netesov, Zhengli Shi

Publikováno v: Archives of Virology
Archives of Virology, Springer Verlag, 2020, 165 (12), pp.3023-3072. ⟨10.1007/s00705-020-04731-2⟩
Archives of Virology, 2020, 165 (12), pp.3023-3072. ⟨10.1007/s00705-020-04731-2⟩
Archives of Virology 165 (2020)
Repositório Digital do Instituto Evandro Chagas (Patuá)
Instituto Evandro Chagas (IEC)
instacron:IEC
Archives of Virology, 165, 3023-3072
SEDICI (UNLP)
Universidad Nacional de La Plata
instacron:UNLP
Archives of virology (Internet) (2020).
info:cnr-pdr/source/autori:Kuhn J.H., Adkins S., Alioto D., Alkhovsky S.V., Amarasinghe G.K., Anthony S.J., Avsic-Zupanc T., Ayllón M.A., Bahl J., Balkema-Buschmann A., Ballinger M.J., Bartonicka T., Basler C., Bavari S., Beer M., Bente D.A., Bergeron E., Bird B.H., Blair C, Blasdell K.R., Bradfute S.B., Breyta R., Briese T., o Brown P.A., Buchholz U.J., Buchmeier M.J., Bukreyev A., Burt F., Buzkan N., Calisher C.H., Cao M., Casas I., Chamberlain J., Chandran K., Charrel R.N., Chen B., Chiumenti M., Choi I.R., Clegg J.C.S., Crozier I., da Graça J.V., Dal Bó E., Dávila A.M.R., de la Torre J.C., de Lamballerie X., de Swart R.L., Di Bello P.L., Di Paola N., Di Serio F., Dietzgen R.G., Digiaro M., Dolja V.V., Dolnik O., Drebot M.A., Drexler J.F., Dürrwald R., Dufkova L., Dundon W.G., Duprex W.P., Dye J.M., Easton A.J., Ebihara H., Elbeaino T., Ergünay K., Fernandes J., Fooks A.R., Formenty P.B.H., Forth L.F., Fouchier R.A.M., Freitas-Astúa J., Gago-Zachert S., Gao G.F., García M.L., García-Sastre A., Garrison A.R., Gbakima A., Goldstein T., Gonzalez J.P.J., Grifths A., Groschup M.H., Günther S., Guterres A., Hall R.A., Hammond J., Hassan M., Hepojoki J., Hepojoki S., Hetzel U., Hewson R., Hofmann B., Hongo S., Höper D., Horie M., Hughes H.R., Hyndman T.H., Jambai A., Jardim R., Jiang D., Jin Q., Jonson G.B., Junglen S., KaradaG S., Keller K.E., Klempa B., Klingström J., Kobinger G., Kondo H., Koonin E.V., Krupovic M., Kurath G., Kuzmin I.V., Laenen L., Lamb R.A., Lambert A.J., Langevin S.L., Lee B., Lemos E.R.S., Leroy E.M., Li D., Li J., Liang M., Liú W., Liú Y., Lukashevich I.S., Maes P., de Souza W.M., Marklewitz M., Marshall S.H., Martelli G.P., Martin R.R., Marzano S.L., Massart S., McCauley J.W., Mielke-Ehret N., Minafra A., Minutolo M., Mirazimi A., Mühlbach H.P., Mühlberger E., Naidu R., Natsuaki T., Navarro B., Navarro J.A., Netesov S.V., Neumann G., Nowotny N., Nunes M.R.T., Nylund A., Økland A.L., Oliveira R.C., Palacios G., Pallas V., Pályi B., Papa A., Parrish C.R., Pauvolid-Corrêa A., Paweska J.T., Payne S., Pérez D.R., Pfaf F., Radoshitzky S.R., Rahman A., Ramos-González P.L., Resende R.O., Reyes C.A., Rima B.K., Romanowski V., Robles Luna G., Rota P., Rubbenstroth D., Runstadler J.A., Ruzek D., Sabanadzovic S., Salát J., Sall A.A., Salvato M.S., Sarpkaya K., Sasaya T., Schwemmle M., Shabbir M.Z., Shí X., Shí Z., Shirako Y., Simmonds P., Sirmarová J., Sironi M., Smither S., Smura T., Song J.W., Spann K.M., Spengler J.R., Stenglein M.D., Stone D.M., Straková P., Takada A., Tesh R.B., Thornburg N.J., Tomonaga K., Tordo N., Towner J.S., Turina M., Tzanetakis I., Ulrich R.G., Vaira A.M., van den Hoogen B., Varsani A., Vasilakis N., Verbeek M., Wahl V., Walker P.J., Wang H., Wang J., Wang X., Wang L.F., Wèi T., Wells H., Whitfeld A.E., Williams J.V., Wolf Y.I., Wú Z., Yang X., Yáng X., Yu X., Yutin N., Zerbini F.M., Zhang T., Zhang Y.Z., Zhou G., Zhou X./titolo:2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales/doi:/rivista:Archives of virology (Internet)/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume
Arch Virol
Archives of Virology, 165(12), 3023-3072. Springer Vienna
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. At the genus rank, 20 new genera were added, two were deleted, one

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c66651ca15e9e3373a1df890b22da88
https://hal-pasteur.archives-ouvertes.fr/pasteur-03112959

Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection

Autor: Lucie Tamisier, Annelies Haegeman, Yoika Foucart, Nicolas Fouillien, Maher Al Rwahnih, Nihal Buzkan, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Marie Lefebvre, Paolo Margaria, Jean Sébastien Reynard, Kristian Stevens, Denis Kutnjak, Sébastien Massart

The widespread use of High-Throughput Sequencing (HTS) for detection of plant viruses and sequencing of plant virus genomes has led to the generation of large amounts of data and of bioinformatics challenges to process them. Many bioinformatics pipel

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f5e6bce472a9856c22892a7831b1f8b