Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Niels W. Hanson"'
Publikováno v:
Bioinformatics
Motivation: A perennial problem in the analysis of environmental sequence information is the assignment of reads or assembled sequences, e.g. contigs or scaffolds, to discrete taxonomic bins. In the absence of reference genomes for most environmental
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::109ad1da672a738fde31401d4ef3448e
http://europepmc.org/articles/PMC5181528
http://europepmc.org/articles/PMC5181528
Autor:
Dongjae Kim, Niels W. Hanson, Tomer Altman, Steven J. Hallam, David A. Relman, Kishori M. Konwar, David L. Dill, Aria S. Hahn
Publikováno v:
Scientific Data
Nature
Nature
Advances in high-throughput sequencing are reshaping how we perceive microbial communities inhabiting the human body, with implications for therapeutic interventions. Several large-scale datasets derived from hundreds of human microbiome samples sour
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec1b76a17db59302fc8cd8010707834d
Autor:
Hiu Kan Cheung, Dongjae Kim, Niels W. Hanson, Kishori M. Konwar, Aria S. Hahn, Maya P. Bhatia, Connor Morgan-Lang, Shang-Ju Wu, Steven J. Hallam
Publikováno v:
Bioinformatics
Summary: Next-generation sequencing is producing vast amounts of sequence information from natural and engineered ecosystems. Although this data deluge has an enormous potential to transform our lives, knowledge creation and translation need software
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77ba6680cc7c7f37542c5a54791a5b66
http://europepmc.org/articles/PMC4595896
http://europepmc.org/articles/PMC4595896
Autor:
Jody J. Wright, Kendra R Maas, Niels W. Hanson, Keith Mewis, Kishori M. Konwar, Steven J. Hallam
Publikováno v:
The ISME Journal
Marine Group A (MGA) is a deeply branching and uncultivated phylum of bacteria. Although their functional roles remain elusive, MGA subgroups are particularly abundant and diverse in oxygen minimum zones and permanent or seasonally stratified anoxic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d5f4446f56dff6d77ddf15dc462880c8
https://doi.org/10.1038/ismej.2013.152
https://doi.org/10.1038/ismej.2013.152
Autor:
Damon Brown, Gregor Wolbring, Zhiguo He, Eugene Kuatsjah, Alireeza Saidi-Mehrabad, Esther Ramos-Padron, Young C. Song, Kishori M. Konwar, Carmen Li, Man-Ling Wong, Camilla L. Nesbø, Sean M. Caffrey, Steve Larter, Lisa M. Gieg, Fauziah F. Rochman, Niels W. Hanson, Payal Sipahimalani, Julia M. Foght, Dongshan An, Sandra L. Wilson, Jung Soh, Thomas R. Jack, Akhil Agrawal, Christoph Wilhelm Sensen, Gerrit Voordouw, Verlyn Leopatra, Thomas B. P. Oldenburg, Xiaoli Dong, Peter F. Dunfield, Antoine P Pagé, Karen Budwill, Steven J. Hallam, Jonathan L. Klassen
Publikováno v:
Environmental Science & Technology
Oil in subsurface reservoirs is biodegraded by resident microbial communities. Water-mediated, anaerobic conversion of hydrocarbons to methane and CO2, catalyzed by syntrophic bacteria and methanogenic archaea, is thought to be one of the dominant pr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ef16047b838eeaf1466ed9b246104ebe
http://europepmc.org/articles/PMC3864245
http://europepmc.org/articles/PMC3864245
Publikováno v:
CIBCB
FAST is a multi-threaded, I/O optimized Seed-and-Extend alignment program. FAST is extensible to nucleotide sequences making it comparable to both BLASTn and BLASTp, and also features several new usage flags reporting only HSPs meeting user defined e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3c8ead285d56e6a218507a765d6e8274
https://doi.org/10.1109/cibcb.2016.7758120
https://doi.org/10.1109/cibcb.2016.7758120
Publikováno v:
Computational Methods for Next Generation Sequencing Data Analysis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::11033695654df6bdcd0624d300bbaeb5
https://doi.org/10.1002/9781119272182.ch2
https://doi.org/10.1002/9781119272182.ch2
Publikováno v:
CIBCB
A fundamental step in the analysis of environmental sequence information is the prediction of potential genes or open reading frames (ORFs) encoding the metabolic potential of individual cells and entire microbial communities. FragGeneScan, a softwar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9ccd59a65176497255b674fe1a84e3c2
https://doi.org/10.1109/cibcb.2015.7300341
https://doi.org/10.1109/cibcb.2015.7300341
Publikováno v:
CIBCB
Accurate description of the microbial communities driving matter and energy transformations in complex ecosystems such as soils cannot yet be effectively accomplished using assembly-based approaches despite the rise of next generation sequencing tech
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::88b26bc1024947dd6c44e47d6fe856ed
https://doi.org/10.1109/cibcb.2015.7300324
https://doi.org/10.1109/cibcb.2015.7300324
Autor:
Steven J. Hallam, Christopher E. Lawson, Eric R. Hall, Barry Rabinowitz, William D. Ramey, Blake J. Strachan, Aria S. Hahn, Donald S. Mavinic, Niels W. Hanson
Publikováno v:
Environmental microbiology. 17(12)
Enhanced biological phosphorus removal (EBPR) relies on diverse but specialized microbial communities to mediate the cycling and ultimate removal of phosphorus from municipal wastewaters. However, little is known about microbial activity and dynamics
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c1d3986fca055e4d1481d548d8189f47
https://pubmed.ncbi.nlm.nih.gov/25857222
https://pubmed.ncbi.nlm.nih.gov/25857222