Zobrazeno 1 - 10
of 151
pro vyhledávání: '"Nicole, Shapiro"'
Autor:
Rasmus O. Jensen, Frederik Schulz, Simon Roux, Dawn M. Klingeman, Wayne P. Mitchell, Daniel Udwary, Sarah Moraïs, Vinicio Reynoso, James Winkler, Shilpa Nagaraju, Sashini De Tissera, Nicole Shapiro, Natalia Ivanova, T. B. K. Reddy, Itzhak Mizrahi, Sagar M. Utturkar, Edward A. Bayer, Tanja Woyke, Nigel J. Mouncey, Michael C. Jewett, Séan D. Simpson, Michael Köpke, David T. Jones, Steven D. Brown
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-20 (2024)
Abstract The genus Clostridium is a large and diverse group within the Bacillota (formerly Firmicutes), whose members can encode useful complex traits such as solvent production, gas-fermentation, and lignocellulose breakdown. We describe 270 genome
Externí odkaz:
https://doaj.org/article/1d13a347d3f84967a3c06b01d08f7dbe
Autor:
Lesley Erica Scott, Anne Nicole Shapiro, Manuel Pedro Da Silva, Jonathan Tsoka, Karen Rita Jacobson, Michael Emch, Harry Moultrie, Helen Elizabeth Jenkins, David Moore, Annelies Van Rie, Wendy Susan Stevens
Publikováno v:
Diagnostics, Vol 13, Iss 20, p 3163 (2023)
An investigation was carried out to examine the use of national Xpert MTB/RIF data (2013–2017) and GIS technology for MTB/RIF surveillance in South Africa. The aim was to exhibit the potential of using molecular diagnostics for TB surveillance acro
Externí odkaz:
https://doaj.org/article/80924c23730e464b86fa27f93cd4fdf4
Autor:
Gina Chaput, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Meghan Whalen, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, I-Min Chen, Dimitrios Stamatis, T. B. K Reddy, Ronan O’Malley, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Tijana Glavina del Rio, Kristen M. DeAngelis
Publikováno v:
Microbiology Spectrum, Vol 10, Iss 3 (2022)
ABSTRACT Novel bacterial isolates with the capabilities of lignin depolymerization, catabolism, or both, could be pertinent to lignocellulosic biofuel applications. In this study, we aimed to identify anaerobic bacteria that could address the economi
Externí odkaz:
https://doaj.org/article/0e0ea69887504ac0867efc6dd09ece02
Autor:
Salma Mukhtar, Ann M. Hirsch, Noor Khan, Kauser A. Malik, Ethan A. Humm, Matteo Pellegrini, Baochen Shi, Leah Briscoe, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T.B.K. Reddy, Chris Daum, Alex Copeland, Natalia N. Ivanova, Nikos C. Kyrpides, Nicole Shapiro, Emiley A. Eloe-Fadrosh, Maskit Maymon, Muhammad S. Mirza, Samina Mehnaz
Publikováno v:
Phytobiomes Journal, Vol 4, Iss 4, Pp 364-374 (2020)
Cowpea is one of the major legumes cultivated in arid and semiarid regions of the world. Four soil-microbial samples (SS-1 through SS-4) collected from semiarid soils in Punjab, Pakistan were planted with cowpea (Vigna unguiculata) crops, which were
Externí odkaz:
https://doaj.org/article/cc1e5d38a4654643a4fa30ea7e52e4ea
Autor:
Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Alyce M. Hancock, Sarah Brazendale, James Bevington, Simon Roux, David Páez-Espino, Stephen Nayfach, Maureen Berg, Frederik Schulz, I-Min A. Chen, Marcel Huntemann, Nicole Shapiro, Nikos C. Kyrpides, Tanja Woyke, Emiley A. Eloe-Fadrosh, Ricardo Cavicchioli
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-24 (2020)
Abstract Background Cold environments dominate the Earth’s biosphere and microbial activity drives ecosystem processes thereby contributing greatly to global biogeochemical cycles. Polar environments differ to all other cold environments by experie
Externí odkaz:
https://doaj.org/article/deb2697ed2be469198ad3fe37eae0a3b
Autor:
Nikolaos Strepis, Henry D. Naranjo, Jan Meier-Kolthoff, Markus Göker, Nicole Shapiro, Nikos Kyrpides, Hans-Peter Klenk, Peter J. Schaap, Alfons J. M. Stams, Diana Z. Sousa
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-13 (2020)
Abstract Background The genus Trichococcus currently contains nine species: T. flocculiformis, T. pasteurii, T. palustris, T. collinsii, T. patagoniensis, T. ilyis, T. paludicola, T. alkaliphilus, and T. shcherbakoviae. In general, Trichococcus speci
Externí odkaz:
https://doaj.org/article/51609830681747f8895040917c34330d
Autor:
George C. diCenzo, Lisa Cangioli, Quentin Nicoud, Janis H. T. Cheng, Matthew J. Blow, Nicole Shapiro, Tanja Woyke, Emanuele G. Biondi, Benoît Alunni, Alessio Mengoni, Peter Mergaert
Publikováno v:
mSystems, Vol 7, Iss 1 (2022)
ABSTRACT Methylation of specific DNA sequences is ubiquitous in bacteria and has known roles in immunity and regulation of cellular processes, such as the cell cycle. Here, we explored DNA methylation in bacteria of the genus Ensifer, including its p
Externí odkaz:
https://doaj.org/article/efe715f439ae4e57b259079a0d03b097
Autor:
Elke R. Duell, Paul M. D’Agostino, Nicole Shapiro, Tanja Woyke, Thilo M. Fuchs, Tobias A. M. Gulder
Publikováno v:
Microbial Cell Factories, Vol 18, Iss 1, Pp 1-11 (2019)
Abstract Background Serratia plymuthica WS3236 was selected for whole genome sequencing based on preliminary genetic and chemical screening indicating the presence of multiple natural product pathways. This led to the identification of a putative sod
Externí odkaz:
https://doaj.org/article/0dda3d42b2724358acf156204c67637d
Autor:
Scott C. Thomas, Devon Payne, Kevin O. Tamadonfar, Cale O. Seymour, Jian-Yu Jiao, Senthil K. Murugapiran, Dengxun Lai, Rebecca Lau, Benjamin P. Bowen, Leslie P. Silva, Katherine B. Louie, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, I-Min Chen, Dimitrios Stamatis, T. B. K. Reddy, Ronan O’Malley, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Emiley Eloe-Fadrosh, Trinity L. Hamilton, Paul Dijkstra, Jeremy A. Dodsworth, Trent R. Northen, Wen-Jun Li, Brian P. Hedlund
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Thermoflexus hugenholtzii JAD2T, the only cultured representative of the Chloroflexota order Thermoflexales, is abundant in Great Boiling Spring (GBS), NV, United States, and close relatives inhabit geothermal systems globally. However, no defined me
Externí odkaz:
https://doaj.org/article/7a1c8e29af404cba92120c46c9f785a5
Autor:
Claire Shaw, Charles Brooke, Erik Hawley, Morgan P. Connolly, Javier A. Garcia, Miranda Harmon-Smith, Nicole Shapiro, Michael Barton, Susannah G. Tringe, Tijana Glavina del Rio, David E. Culley, Richard Castenholz, Matthias Hess
Publikováno v:
Frontiers in Microbiology, Vol 11 (2020)
Cyanobacteria are found in most illuminated environments and are key players in global carbon and nitrogen cycling. Although significant efforts have been made to advance our understanding of this important phylum, still little is known about how mem
Externí odkaz:
https://doaj.org/article/9887e36f105c44f1b13d2cfe85d006a7