Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Autor: Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, Marisol Sánchez-García, Emmanuelle Morin, Bill Andreopoulos, Kerrie W. Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, Pedro W. Crous, Laure Fauchery, Mariangela Girlanda, Richard D. Hayes, Zsófia Kéri, Kurt LaButti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude Murat, Matt Nolan, Robin A. Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, Yaron Sitrit, J. Benjamin Stielow, Gergely Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph W. Spatafora, Leho Tedersoo, Lu-Min Vaario, Akiyoshi Yamada, Mi Yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrian, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor V. Grigoriev, David Hibbett, László G. Nagy, Francis M. Martin

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-17 (2020)

Mycorrhizal symbioses have evolved repeatedly in diverse fungal lineages. A large phylogenomic analysis sheds light on genomic changes associated with transitions from saprotrophy to symbiosis, including divergent genetic innovations underlying the c

Externí odkaz: https://doaj.org/article/3b590b5be4d447b18b8a203b8982f8ac

Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence

Autor: Johannes Lambrecht, Nicolas Cichocki, Thomas Hübschmann, Christin Koch, Hauke Harms, Susann Müller

Publikováno v: Microbial Cell Factories, Vol 16, Iss 1, Pp 1-15 (2017)

Abstract Background The widely established production of CH4 from renewable biomass in industrial scale anaerobic reactors may play a major role in the future energy supply. It relies on methanogenic archaea as key organisms which represent the bottl

Externí odkaz: https://doaj.org/article/32b274ef0de046e693c2d3817d1cd47a

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

Autor: Zishu Liu, Nicolas Cichocki, Fabian Bonk, Susanne Günther, Florian Schattenberg, Hauke Harms, Florian Centler, Susann Müller

Publikováno v: mSphere, Vol 3, Iss 1 (2018)

ABSTRACT Natural microbial communities affect human life in countless ways, ranging from global biogeochemical cycles to the treatment of wastewater and health via the human microbiome. In order to probe, monitor, and eventually control these communi

Externí odkaz: https://doaj.org/article/2beaa2d1778843ca9001548d4ef255d5

Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee

Autor: Nicolas Cichocki, Francis Martin, Annegret Kohler, Emmanuelle Morin, Igor V. Grigoriev, Claude Murat, Herminia De la Varga, Jianping Xu

Publikováno v: Microbiology Resource Announcements
Microbiology Resource Announcements, American Society for Microbiology, 2021, 10 (4), ⟨10.1128/MRA.00799-20⟩
Microbiology resource announcements, vol 10, iss 4

Tuber brumale and Tuber indicum (Pezizomycetes) are two edible black truffles establishing ectomycorrhizal symbiosis with trees and shrubs. T. brumale is ubiquitous in Europe, and T. indicum is mainly found in China. Here, we present the draft genome

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d510a685c39959318b9d0f332c4cca22
https://hal.archives-ouvertes.fr/hal-03324444

Neutral mechanisms and niche differentiation in steady-state insular microbial communities revealed by single cell analysis

Autor: Irina Dana Ofiţeru, Volker Grimm, Zishu Liu, Thomas Hübschmann, William T. Sloan, Susann Müller, Nicolas Cichocki, Christine Süring

Publikováno v: Environmental Microbiology. 21:164-181

In completely insular microbial communities, evolution of community structure cannot be shaped by the immigration of new members. In addition, when those communities are run in steady state, the influence of environmental factors on their assembly is

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2010715a0296a0721c63a308a576cbd5
https://doi.org/10.1111/1462-2920.14437