Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Nicolas C. Rochette"'
Autor:
Stephanie Canale, Renuka Ramanathan, Matteo Pelligrini, Nicolas C. Rochette, Brian B. Nadel, Melissa Gee
Publikováno v:
Heliyon, Vol 7, Iss 11, Pp e08335- (2021)
Background: Breastmilk is considered the gold standard of infant nutrition. Many mothers have difficulty with breastfeeding and over 50% of women stop due to perceived low production. Aims and methods: Our study compared gene expression in 8 samples
Externí odkaz:
https://doaj.org/article/bdc815853c624fef9d808b9d97a121a7
On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity
Autor:
Nicolas C. Rochette, Angel G. Rivera‐Colón, Jessica Walsh, Thomas J. Sanger, Shane C. Campbell‐Staton, Julian M. Catchen
Publikováno v:
Molecular Ecology Resources.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::357944949d837781744000d084fababb
https://doi.org/10.1111/1755-0998.13800
https://doi.org/10.1111/1755-0998.13800
On the causes, consequences, and avoidance of PCR duplicates: towards a theory of library complexity
Autor:
Nicolas C. Rochette, Angel G. Rivera-Colón, Jessica Walsh, Thomas J. Sanger, Shane C. Campbell-Staton, Julian M. Catchen
Library preparation protocols for most sequencing technologies involve PCR amplification of the template DNA, which open the possibility that a given template DNA molecule is sequenced multiple times. Reads arising from this phenomenon, known as PCR
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2ca3d7e6d38b363e8012f63599e94b41
https://doi.org/10.1101/2022.10.10.511638
https://doi.org/10.1101/2022.10.10.511638
Autor:
Kristin M. Winchell, Inbar Maayan, Rena M. Schweizer, Jason R. Fredette, Shane C. Campbell-Staton, Nicolas C. Rochette, Julian M. Catchen
Publikováno v:
Nature Ecology & Evolution. 4:652-658
Only recently have we begun to understand the ecological and evolutionary effects of urbanization on species, with studies revealing drastic impacts on community composition, gene flow, behaviour, morphology and physiology. However, our understanding
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c1499343305e83667abb44ef6e2d6244
https://doi.org/10.1038/s41559-020-1131-8
https://doi.org/10.1038/s41559-020-1131-8
Autor:
Niraj Rayamajhi, Torsten H. Struck, Nicolas C. Rochette, José Cerca, Marius F. Maurstad, Julian M. Catchen, Angel G. Rivera-Colón
Publikováno v:
Methods in Ecology and Evolution
1. The restriction site-associated DNA (RADseq) family of protocols involves digesting DNA and sequencing the region flanking the cut site, thus providing a cost and time-efficient way for obtaining thousands of genomic markers. However, when working
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::622defcd510ecea15b2577981f3ca4c4
http://hdl.handle.net/10852/93147
http://hdl.handle.net/10852/93147
Autor:
Niraj Rayamajhi, Nicolas C. Rochette, Torsten H. Struck, Marius F. Maurstad, Julian M. Catchen, José Cerca, Angel G. Rivera-Colón
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ab78259828ca00977f4c620b83ac4eb2
https://doi.org/10.1111/2041-210x.13562/v2/response1
https://doi.org/10.1111/2041-210x.13562/v2/response1
Autor:
Renuka Ramanathan, Matteo Pelligrini, Nicolas C. Rochette, Stephanie Canale, Melissa Gee, Brian B. Nadel
Publikováno v:
Heliyon, Vol 7, Iss 11, Pp e08335-(2021)
Heliyon
Heliyon
Background Breastmilk is considered the gold standard of infant nutrition. Many mothers have difficulty with breastfeeding and over 50% of women stop due to perceived low production. Aims and methods Our study compared gene expression in 8 samples of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6cfcc399cd89622057508450e159c89e
https://doi.org/10.1016/j.heliyon.2021.e08335
https://doi.org/10.1016/j.heliyon.2021.e08335
Autor:
Julian M. Catchen, Nicolas C. Rochette
Publikováno v:
Nature Protocols. 12:2640-2659
In this protocol, the authors provide a strategy and set of methods to analyze restriction-site-associated DNA-sequencing (RAD-seq) data using Stacks, enabling the genome-wide discovery and genotyping of SNPs across a range of systems. Restriction si
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6606975b2fe43c3277052ee5e29a965d
https://doi.org/10.1038/nprot.2017.123
https://doi.org/10.1038/nprot.2017.123
Publikováno v:
Molecular ecology resourcesREFERENCES. 21(2)
Restriction-site Associated DNA sequencing (RADseq) has become a powerful and versatile tool in modern population genomics, enabling large-scale genomic analyses in otherwise inaccessible biological systems. With its widespread use, different variant
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7dd0750672985818d68d5f2fc950083
https://pubmed.ncbi.nlm.nih.gov/32603498
https://pubmed.ncbi.nlm.nih.gov/32603498
Publikováno v:
Molecular ecologyREFERENCES. 28(21)
For half a century population genetics studies have put type II restriction endonucleases to work. Now, coupled with massively-parallel, short-read sequencing, the family of RAD protocols that wields these enzymes has generated vast genetic knowledge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dcb439c06c6f96e8de827aec8077d00f
https://pubmed.ncbi.nlm.nih.gov/31550391
https://pubmed.ncbi.nlm.nih.gov/31550391