Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Nicolai Karcher"'
Autor:
Hans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, Nicolai Karcher, Quentin Clayssen, Marisa Isabell Keller, Jakob Wirbel, Peer Bork, Daniel R. Mende, Georg Zeller, Shinichi Sunagawa
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-12 (2022)
Abstract Background Taxonomic profiling is a fundamental task in microbiome research that aims to detect and quantify the relative abundance of microorganisms in biological samples. Available methods using shotgun metagenomic data generally depend on
Externí odkaz:
https://doaj.org/article/7dcca887fbe548e4aa354361f2fc4c09
Autor:
Nicolai Karcher, Eleonora Nigro, Michal Punčochář, Aitor Blanco-Míguez, Matteo Ciciani, Paolo Manghi, Moreno Zolfo, Fabio Cumbo, Serena Manara, Davide Golzato, Anna Cereseto, Manimozhiyan Arumugam, Thi Phuong Nam Bui, Hanne L. P. Tytgat, Mireia Valles-Colomer, Willem M. de Vos, Nicola Segata
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)
Abstract Background Akkermansia muciniphila is a human gut microbe with a key role in the physiology of the intestinal mucus layer and reported associations with decreased body mass and increased gut barrier function and health. Despite its biomedica
Externí odkaz:
https://doaj.org/article/3ea71b436b9b498aaee8e0e2ec03510e
Autor:
Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork, Shinichi Sunagawa, Georg Zeller
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-27 (2021)
Abstract The human microbiome is increasingly mined for diagnostic and therapeutic biomarkers using machine learning (ML). However, metagenomics-specific software is scarce, and overoptimistic evaluation and limited cross-study generalization are pre
Externí odkaz:
https://doaj.org/article/95e2803d50604883abc56458a1115172
Autor:
Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara, Federica Armanini, Debbie Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Valles-Colomer, Roberta Raffaetà, Omar Rota-Stabelli, Maria Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-27 (2020)
Abstract Background Eubacterium rectale is one of the most prevalent human gut bacteria, but its diversity and population genetics are not well understood because large-scale whole-genome investigations of this microbe have not been carried out. Resu
Externí odkaz:
https://doaj.org/article/f32fcb210c9e4d5b862390f89e7cb781
Autor:
Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-16 (2019)
Abstract Background Humans have coevolved with microbial communities to establish a mutually advantageous relationship that is still poorly characterized and can provide a better understanding of the human microbiome. Comparative metagenomic analysis
Externí odkaz:
https://doaj.org/article/09280fc3e5d849bdb4284e0f5bacc715
Autor:
Gianluca Ianiro, Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar, Francesco Beghini, Aitor Blanco-Míguez, Fabio Cumbo, Paolo Manghi, Federica Pinto, Luca Masucci, Gianluca Quaranta, Silvia De Giorgi, Giusi Desirè Sciumè, Stefano Bibbò, Federica Del Chierico, Lorenza Putignani, Maurizio Sanguinetti, Antonio Gasbarrini, Mireia Valles-Colomer, Giovanni Cammarota, Nicola Segata
Publikováno v:
Nature Medicine
Fecal microbiota transplantation (FMT) is highly effective against recurrent Clostridioides difficile infection and is considered a promising treatment for other microbiome-related disorders, but a comprehensive understanding of microbial engraftment
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ba549141c883691248ff4ca60c47e15e
https://doi.org/10.1038/s41591-022-01964-3
https://doi.org/10.1038/s41591-022-01964-3
Autor:
Jacob Bobonis, Karin Mitosch, André Mateus, Nicolai Karcher, George Kritikos, Joel Selkrig, Matylda Zietek, Vivian Monzon, Birgit Pfalz, Sarela Garcia-Santamarina, Marco Galardini, Anna Sueki, Callie Kobayashi, Frank Stein, Alex Bateman, Georg Zeller, Mikhail M. Savitski, Johanna R. Elfenbein, Helene L. Andrews-Polymenis, Athanasios Typas
Publikováno v:
Nature. 609:144-150
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::68fb129fb0d7097fab919fe2422c6525
https://doi.org/10.1038/s41586-022-05091-4
https://doi.org/10.1038/s41586-022-05091-4
Publikováno v:
Der Nephrologe. 16:154-159
Trotz bahnbrechender Erfolge in der Organtransplantation stellen die Transplantatabstosung und immunsuppressivainduzierte Komplikationen nach wie vor eine grose Herausforderung dar. Neuere Studien legen nahe, dass das Darmmikrobiom das Transplantatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6d0d4feacf8c12f5583e3db5281bd11a
https://doi.org/10.1007/s11560-021-00492-4
https://doi.org/10.1007/s11560-021-00492-4
Autor:
Anthony Fullam, Ivica Letunic, Thomas S B Schmidt, Quinten R Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M Maistrenko, Lukas Malfertheiner, Alessio Milanese, Joao Frederico Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Christian von Mering, Peer Bork, Daniel R Mende
Publikováno v:
Nucleic acids research, 51(D1), D760-D766. Oxford University Press
Nucleic Acids Research, 51 (D1)
Nucleic Acids Research, 51 (D1)
7 Pág.
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96ceca1546f3e14bdfc0586a783af884
https://www.vliz.be/imisdocs/publications/34/386734.pdf
https://www.vliz.be/imisdocs/publications/34/386734.pdf
Autor:
Hans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, Nicolai Karcher, Quentin Clayssen, Marisa Isabell Metzger, Jakob Wirbel, Peer Bork, Daniel R. Mende, Georg Zeller, Shinichi Sunagawa
BackgroundTaxonomic profiling is a fundamental task in microbiome research that aims to detect and quantify the relative abundance of microorganisms in biological samples. Available methods using shotgun metagenomic data generally depend on the avail
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e282d9f68e1fb6fae3c9ec0f20636861
https://doi.org/10.1101/2021.04.20.440600
https://doi.org/10.1101/2021.04.20.440600