Zobrazeno 1 - 10
of 111
pro vyhledávání: '"Nicholas A Bokulich"'
Autor:
Nicholas A Bokulich, Paweł Łaniewski, Anja Adamov, Dana M Chase, J Gregory Caporaso, Melissa M Herbst-Kralovetz
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 2, p e1009876 (2022)
Emerging evidence suggests that host-microbe interaction in the cervicovaginal microenvironment contributes to cervical carcinogenesis, yet dissecting these complex interactions is challenging. Herein, we performed an integrated analysis of multiple
Externí odkaz:
https://doaj.org/article/ee1cc76221764a50b6c146450928f3cd
Autor:
Michael S Robeson, Devon R O'Rourke, Benjamin D Kaehler, Michal Ziemski, Matthew R Dillon, Jeffrey T Foster, Nicholas A Bokulich
Publikováno v:
PLoS Computational Biology, Vol 17, Iss 11, p e1009581 (2021)
Nucleotide sequence and taxonomy reference databases are critical resources for widespread applications including marker-gene and metagenome sequencing for microbiome analysis, diet metabarcoding, and environmental DNA (eDNA) surveys. Reproducibly ge
Externí odkaz:
https://doaj.org/article/3b3ee68d2d0a49df902bccb26c1813c2
Autor:
Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory Caporaso
Publikováno v:
PLoS Computational Biology, Vol 17, Iss 6, p e1009056 (2021)
In October of 2020, in response to the Coronavirus Disease 2019 (COVID-19) pandemic, our team hosted our first fully online workshop teaching the QIIME 2 microbiome bioinformatics platform. We had 75 enrolled participants who joined from at least 25
Externí odkaz:
https://doaj.org/article/32a041d9d5914929a84b078cdac01585
Publikováno v:
eLife, Vol 4 (2015)
Distinct microbial ecosystems have evolved to meet the challenges of indoor environments, shaping the microbial communities that interact most with modern human activities. Microbial transmission in food-processing facilities has an enormous impact o
Externí odkaz:
https://doaj.org/article/033435c146de4c8c8db5d9af713a4584
Publikováno v:
PLoS ONE, Vol 8, Iss 6, p e66437 (2013)
During the transformation of grapes to wine, wine fermentations are exposed to a large area of specialized equipment surfaces within wineries, which may serve as important reservoirs for two-way transfer of microbes between fermentations. However, th
Externí odkaz:
https://doaj.org/article/548b020d33fb42ed83256880b74ebcf4
Autor:
Betty W Ma, Nicholas A Bokulich, Patricia A Castillo, Anchasa Kananurak, Mark A Underwood, David A Mills, Charles L Bevins
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e47416 (2012)
The mammalian intestine harbors a vast, complex and dynamic microbial population, which has profound effects on host nutrition, intestinal function and immune response, as well as influence on physiology outside of the alimentary tract. Imbalance in
Externí odkaz:
https://doaj.org/article/d1b6d3a5dad74e9aa0f10ce02fc1ce0e
Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale.
Publikováno v:
PLoS ONE, Vol 7, Iss 4, p e35507 (2012)
American coolship ale (ACA) is a type of spontaneously fermented beer that employs production methods similar to traditional Belgian lambic. In spite of its growing popularity in the American craft-brewing sector, the fermentation microbiology of ACA
Externí odkaz:
https://doaj.org/article/6ae9b5b82c574df59d3db9a34e78b6a8
Publikováno v:
PLoS ONE, Vol 7, Iss 5, p e36357 (2012)
While wine fermentation has long been known to involve complex microbial communities, the composition and role of bacteria other than a select set of lactic acid bacteria (LAB) has often been assumed either negligible or detrimental. This study serve
Externí odkaz:
https://doaj.org/article/3ee2df01577a4624943df3b0788b628d
Research into brewing yeast and other organisms associated with beer and brewing has experienced many important advances in the past decade, propelled by technological advances in tools fundamental to the investigation of microbes and their metabolis
Autor:
Talima Pearson, J. Gregory Caporaso, Monica Yellowhair, Nicholas A. Bokulich, Megha Padi, Denise J. Roe, Betsy C. Wertheim, Mark Linhart, Jessica A. Martinez, Cherae Bilagody, Heidie Hornstra, David S. Alberts, Peter Lance, Patricia A. Thompson
Publikováno v:
Cancer Medicine, Vol 8, Iss 2, Pp 617-628 (2019)
Abstract It has been previously reported that ursodeoxycholic acid (UDCA), a therapeutic bile acid, reduced risk for advanced colorectal adenoma in men but not women. Interactions between the gut microbiome and fecal bile acid composition as a factor
Externí odkaz:
https://doaj.org/article/8223f218e0d24b918621c7369cd70816