COSMIC: a curated database of somatic variants and clinical data for cancer.

Autor: Sondka, Zbyslaw, Dhir, Nidhi Bindal, Carvalho-Silva, Denise, Jupe, Steven, Madhumita, McLaren, Karen, Starkey, Mike, Ward, Sari, Wilding, Jennifer, Ahmed, Madiha, Argasinska, Joanna, Beare, David, Chawla, Manpreet Singh, Duke, Stephen, Fasanella, Ilaria, Neogi, Avirup Guha, Haller, Susan, Hetenyi, Balazs, Hodges, Leonie, Holmes, Alex

Publikováno v: Nucleic Acids Research; 1/5/2024, Vol. 52 Issue D1, pD1210-D1217, 8p

NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling.

Autor: Hanssen F; Quantitative Biology Center, Eberhard Karls University Tübingen, Tübingen, Germany., Gabernet G; Quantitative Biology Center, Eberhard Karls University Tübingen, Tübingen, Germany., Bäuerle F; Quantitative Biology Center, Eberhard Karls University Tübingen, Tübingen, Germany.; M3 Research Center, University Hospital, Tübingen, Germany.; Institute for Translational Bioinformatics, University Medical Center, Tübingen, Germany.; Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard-Karls University of Tübingen, Tübingen, Germany., Stöcker B; Bioinformatics and Computational Oncology, Institute for Artificial Intelligence in Medicine (IKIM), University Medicine Essen, University of Duisburg-Essen, Essen, Germany., Wiegand F; Bioinformatics and Computational Oncology, Institute for Artificial Intelligence in Medicine (IKIM), University Medicine Essen, University of Duisburg-Essen, Essen, Germany., Smith NH; TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany., Mertes C; TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany.; Munich Data Science Institute, Technical University of Munich, Munich, Germany.; Institute of Human Genetics, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany., Neogi AG; Cologne Center for Genomics, University of Cologne, Cologne, Germany., Brandhoff L; Cologne Center for Genomics, University of Cologne, Cologne, Germany.; West German Genome Center - Cologne, University of Cologne, Cologne, Germany., Ossowski A; Cologne Center for Genomics, University of Cologne, Cologne, Germany., Altmueller J; Cologne Center for Genomics, University of Cologne, Cologne, Germany.; Core Facility Genomics, Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany.; Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany., Becker K; Cologne Center for Genomics, University of Cologne, Cologne, Germany., Petzold A; DRESDEN-concept Genome Center, TUD Dresden University of Technology, Dresden, Germany., Sturm M; Institute of Medical Genetics and Applied Genomics, University Hospital Tuebingen, Tübingen, Germany., Stöcker T; Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany., Sivalingam S; Institute of Human Genetics, Medical Faculty and University Hospital Düsseldorf, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany., Brand F; Institute for Genomic Statistics and Bioinformatics, Medical Faculty, University of Bonn, Bonn, Germany., Schmidt A; Institute of Human Genetics, University Hospital of Bonn, Bonn, Germany., Buness A; Core Unit for Bioinformatics Analysis, University Hospital Bonn, Bonn, Germany., Probst AJ; Environmental Metagenomics, Research Center One Health Ruhr, University Alliance Ruhr, Faculty of Chemistry, University of Duisburg-Essen, Essen, Germany., Motameny S; Cologne Center for Genomics, University of Cologne, Cologne, Germany.; West German Genome Center - Cologne, University of Cologne, Cologne, Germany., Köster J; Bioinformatics and Computational Oncology, Institute for Artificial Intelligence in Medicine (IKIM), University Medicine Essen, University of Duisburg-Essen, Essen, Germany.; German Cancer Consortium, Essen, Germany.

Publikováno v: F1000Research [F1000Res] 2024 Sep 12; Vol. 12, pp. 1125. Date of Electronic Publication: 2024 Sep 12 (Print Publication: 2023).