Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana

Autor: Giuliano Gattoni, Fabiana Di Costanzo, Rafael R. de la Haba, Ana B. Fernández, Shaday Guerrero-Flores, Nelly Selem-Mojica, Antonio Ventosa, Paulina Corral

Publikováno v: Frontiers in Microbiology, Vol 14 (2023)

Shifting the bioprospecting targets toward underexplored bacterial groups combined with genome mining studies contributes to avoiding the rediscovery of known compounds by revealing novel, promising biosynthetic gene clusters (BGCs). With the aim of

Externí odkaz: https://doaj.org/article/367534367030413e91f3a586243b9cd9

Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability

Autor: Giuliano Gattoni, Rafael R. de la Haba, Jesús Martín, Fernando Reyes, Cristina Sánchez-Porro, Antonia Feola, Candida Zuchegna, Shaday Guerrero-Flores, Mario Varcamonti, Ezio Ricca, Nelly Selem-Mojica, Antonio Ventosa, Paulina Corral

Publikováno v: Frontiers in Microbiology, Vol 13 (2023)

The fraction of low-abundance microbiota in the marine environment is a promising target for discovering new bioactive molecules with pharmaceutical applications. Phenomena in the ocean such as diel vertical migration (DVM) and seasonal dynamic event

Externí odkaz: https://doaj.org/article/85377764af3049b9a07377ef8814add8

Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants

Autor: Selene Zárate, Blanca Taboada, Mauricio Rosales-Rivera, Rodrigo García-López, José Esteban Muñoz-Medina, Alejandro Sanchez-Flores, Alfredo Herrera-Estrella, Bruno Gómez-Gil, Nelly Selem Mojica, Angel Gustavo Salas-Lais, Joel Armando Vazquez-Perez, David Alejandro Cabrera-Gaytán, Larissa Fernandes-Matano, Luis Antonio Uribe-Noguez, Juan Bautista Chale-Dzul, Brenda Irasema Maldonado Meza, Fidencio Mejía-Nepomuceno, Rogelio Pérez-Padilla, Rosa María Gutiérrez-Ríos, Antonio Loza, Benjamin Roche, Susana López, Carlos F. Arias

Publikováno v: Viruses, Vol 15, Iss 1, p 243 (2023)

Purpose: The Omicron subvariant BA.1 of SARS-CoV-2 was first detected in November 2021 and quickly spread worldwide, displacing the Delta variant. In this work, a characterization of the spread of this variant in Mexico is presented. Methods: The tim

Externí odkaz: https://doaj.org/article/1aa9872670f94056a52ba92e618d1d6c

MIBiG 3.0:: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

Autor: Barbara R Terlouw, Kai Blin, Jorge C Navarro-Muñoz, Nicole E Avalon, Marc G Chevrette, Susan Egbert, Sanghoon Lee, David Meijer, Michael J J Recchia, Zachary L Reitz, Jeffrey A van Santen, Nelly Selem-Mojica, Thomas Tørring, Liana Zaroubi, Mohammad Alanjary, Gajender Aleti, César Aguilar, Suhad A A Al-Salihi, Hannah E Augustijn, J Abraham Avelar-Rivas, Luis A Avitia-Domínguez, Francisco Barona-Gómez, Jordan Bernaldo-Agüero, Vincent A Bielinski, Friederike Biermann, Thomas J Booth, Victor J Carrion Bravo, Raquel Castelo-Branco, Fernanda O Chagas, Pablo Cruz-Morales, Chao Du, Katherine R Duncan, Athina Gavriilidou, Damien Gayrard, Karina Gutiérrez-García, Kristina Haslinger, Eric J N Helfrich, Justin J J van der Hooft, Afif P Jati, Edward Kalkreuter, Nikolaos Kalyvas, Kyo Bin Kang, Satria Kautsar, Wonyong Kim, Aditya M Kunjapur, Yong-Xin Li, Geng-Min Lin, Catarina Loureiro, Joris J R Louwen, Nico L L Louwen, George Lund, Jonathan Parra, Benjamin Philmus, Bita Pourmohsenin, Lotte J U Pronk, Adriana Rego, Devasahayam Arokia Balaya Rex, Serina Robinson, L Rodrigo Rosas-Becerra, Eve T Roxborough, Michelle A Schorn, Darren J Scobie, Kumar Saurabh Singh, Nika Sokolova, Xiaoyu Tang, Daniel Udwary, Aruna Vigneshwari, Kristiina Vind, Sophie P J M Vromans, Valentin Waschulin, Sam E Williams, Jaclyn M Winter, Thomas E Witte, Huali Xie, Dong Yang, Jingwei Yu, Mitja Zdouc, Zheng Zhong, Jérôme Collemare, Roger G Linington, Tilmann Weber, Marnix H Medema

Publikováno v: Nucleic Acids Research, 51(D1), D603-D610. Oxford University Press
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, ZL, van Santen, JA, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, HE, Avelar-Rivas, JA, Avitia-Domínguez, LA, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, TJ, Carrion Bravo, VJ, Castelo-Branco, R, Chagas, FO, Cruz-Morales, P, Du, C, Duncan, KR, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, AP, Kalkreuter, E, Kalyvas, N, Kang, KB, Kautsar, S, Kim, W, Kunjapur, AM, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, DAB, Robinson, S, Rosas-Becerra, LR, Roxborough, ET, Schorn, MA, Scobie, DJ, Singh, KS, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, SE, Winter, JM, Witte, TE, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, RG, Weber, T & Medema, MH 2023, ' MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, gkac1049, pp. D603-D610 . https://doi.org/10.1093/nar/gkac1049
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, Z L, van Santen, J A, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, H E, Avelar-Rivas, J A, Avitia-Domínguez, L A, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, T J, Carrion Bravo, V J, Castelo-Branco, R, Chagas, F O, Cruz-Morales, P, Du, C, Duncan, K R, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, A P, Kalkreuter, E, Kalyvas, N, Kang, K B, Kautsar, S, Kim, W, Kunjapur, A M, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, D A B, Robinson, S, Rosas-Becerra, L R, Roxborough, E T, Schorn, M A, Scobie, D J, Singh, K S, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, S E, Winter, J M, Witte, T E, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, R G, Weber, T & Medema, M H 2023, ' MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, pp. D603–D610 . https://doi.org/10.1093/nar/gkac1049
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, Z L, van Santen, J A, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, H E, Avelar-Rivas, J A, Avitia-Domínguez, L A, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, T J, Carrion Bravo, V J, Castelo-Branco, R, Chagas, F O, Cruz-Morales, P, Du, C, Duncan, K R, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, A P, Kalkreuter, E, Kalyvas, N, Kang, K B, Kautsar, S, Kim, W, Kunjapur, A M, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, D A B, Robinson, S, Rosas-Becerra, L R, Roxborough, E T, Schorn, M A, Scobie, D J, Singh, K S, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, S E, Winter, J M, Witte, T E, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, R G, Weber, T & Medema, M H 2023, ' MIBiG 3.0 : a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, pp. D603–D610 . https://doi.org/10.1093/nar/gkac1049
Nucleic acids research, 51(D1), D603-D610
Nucleic acids research 51 (2023) D1

With an ever-increasing amount of (meta)genomic data being deposited in sequence databases, (meta)genome mining for natural product biosynthetic pathways occupies a critical role in the discovery of novel pharmaceutical drugs, crop protection agents

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e557bd5c3d2ddd7d6574fc9d08027c2
https://pure.knaw.nl/portal/en/publications/4e99309a-6840-4150-801f-070cfa20d40c

Regional epidemic dynamics and Delta variant diversity resulted in varying rates of spread of Omicron-BA.1 in Mexico

Autor: Selene Zárate, Blanca Taboada, Mauricio Rosales-Rivera, Rodrigo García-López, José Esteban Muñoz-Medina, Alejandro Sanchez-Flores, Alfredo Herrera-Estrella, Bruno Gómez-Gil, Nelly Selem Mojica, Angel Gustavo Salas-Lais, Joel Armando Vazquez-Perez, David Alejandro Cabrera-Gaytán, Larissa Fernandes-Matano, Luis Antonio Uribe-Noguez, Juan Bautista Chale-Dzul, Brenda Irasema Maldonado Meza, Fidencio Mejía-Nepomuceno, Rogelio Pérez-Padilla, Rosa María Gutiérrez-Ríos, Antonio Loza, Susana López, Carlos F. Arias

The Omicron subvariant BA.1 of SARS-CoV-2 was first detected in November 2021 and quickly spread worldwide, displacing the Delta variant. In Mexico, this subvariant began spreading during the first week of December 2021 and became dominant in the nex

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::cf7650ed4840b856e063d017fee0ef16
https://doi.org/10.1101/2022.10.18.512746