A cis -regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation.

Autor: Donohue LKH; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.; Synthego, Redwood City, CA, USA.; These authors contributed equally., Guo MG; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Program in Biomedical Informatics, Stanford University, Stanford, CA, USA.; These authors contributed equally., Zhao Y; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Synthego, Redwood City, CA, USA., Jung N; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Department of Life Science, Pohang University of Science and Technology, Pohang, Korea., Bussat RT; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; 23andMe, Inc., Sunnyvale, CA, USA., Kim DS; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Program in Biomedical Informatics, Stanford University, Stanford, CA, USA., Neela PH; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Fauna Bio, Emeryville, CA, USA., Kellman LN; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Program in Cancer Biology, Stanford University, Stanford, CA, USA., Garcia OS; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA., Meyers RM; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA., Altman RB; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Program in Biomedical Informatics, Stanford University, Stanford, CA, USA.; Department of Bioengineering, Stanford University, Stanford, CA, USA., Khavari PA; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Program in Cancer Biology, Stanford University, Stanford, CA, USA.; Veterans Affairs Palo Alto Healthcare System, Palo Alto, CA, USA.; Lead contact.

Publikováno v: Cell genomics [Cell Genom] 2022 Nov 09; Vol. 2 (11). Date of Electronic Publication: 2022 Oct 05.

The KLF16/MYC feedback loop is a therapeutic target in bladder cancer.

Autor: Zheng, Lisi¹ (AUTHOR), Wang, Jingxuan¹ (AUTHOR), Han, Shan¹ (AUTHOR), Zhong, Li^1,2 (AUTHOR), Liu, Zefu^1,3 (AUTHOR), Li, Bin⁴ (AUTHOR), Zhang, Ruhua¹ (AUTHOR), Zhou, Liwen¹ (AUTHOR), Zheng, Xianchong¹ (AUTHOR), Liu, Zhenhua¹ (AUTHOR), Zeng, Cuiling¹ (AUTHOR), Li, Ruonan¹ (AUTHOR), Zou, Yezi¹ (AUTHOR), Wang, Liqin¹ (AUTHOR) wanglq1@sysucc.org.cn, Wu, Yuanzhong¹ (AUTHOR) wuyzh@sysucc.org.cn, Kang, Tiebang¹ (AUTHOR) kangtb@sysucc.org.cn

Publikováno v: Journal of Experimental & Clinical Cancer Research (17569966). 11/18/2024, Vol. 43 Issue 1, p1-22. 22p.

MITF regulates IDH1, NNT, and a transcriptional program protecting melanoma from reactive oxygen species.

Autor: Roider, Elisabeth^1,2,3 (AUTHOR) Elisabeth.Roider@usb.ch, Lakatos, Alexandra I. T.^4,5,6 (AUTHOR), McConnell, Alicia M.⁷ (AUTHOR), Wang, Poguang⁸ (AUTHOR), Mueller, Alina³ (AUTHOR), Kawakami, Akinori¹ (AUTHOR), Tsoi, Jennifer^9,10 (AUTHOR), Szabolcs, Botond L.^4,5,6 (AUTHOR), Ascsillán, Anna A.^4,5,6 (AUTHOR), Suita, Yusuke¹ (AUTHOR), Igras, Vivien¹ (AUTHOR), Lo, Jennifer A.¹ (AUTHOR), Hsiao, Jennifer J.¹ (AUTHOR), Lapides, Rebecca^1,11 (AUTHOR), Pál, Dorottya M. P.^4,5,6 (AUTHOR), Lengyel, Anna S.^4,5,6 (AUTHOR), Navarini, Alexander³ (AUTHOR), Okazaki, Arimichi² (AUTHOR), Iliopoulos, Othon² (AUTHOR), Németh, István¹² (AUTHOR)

Publikováno v: Scientific Reports. 9/14/2024, Vol. 14 Issue 1, p1-13. 13p.

MicroRNAs targeted mTOR as therapeutic agents to improve radiotherapy outcome.

Autor: Taeb, Shahram¹ (AUTHOR), Rostamzadeh, Davoud² (AUTHOR), Amini, Seyed Mohammad³ (AUTHOR), Rahmati, Mohammad⁴ (AUTHOR), Eftekhari, Mohammad⁴ (AUTHOR), Safari, Arash⁵ (AUTHOR), Najafi, Masoud^6,7,8 (AUTHOR) masoud.najafi@kums.ac.ir

Publikováno v: Cancer Cell International. 7/4/2024, Vol. 24 Issue 1, p1-15. 15p.

RNA-protein interaction detection in living cells.

Autor: Ramanathan M; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Majzoub K; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA., Rao DS; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Neela PH; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Zarnegar BJ; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Mondal S; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Roth JG; Department of Neurosurgery, Stanford University School of Medicine, Stanford, California, USA., Gai H; Department of Neurosurgery, Stanford University School of Medicine, Stanford, California, USA., Kovalski JR; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Siprashvili Z; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA., Palmer TD; Department of Neurosurgery, Stanford University School of Medicine, Stanford, California, USA., Carette JE; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA., Khavari PA; Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA.; Veterans Affairs Palo Alto Healthcare System, Palo Alto, California, USA.

Publikováno v: Nature methods [Nat Methods] 2018 Mar; Vol. 15 (3), pp. 207-212. Date of Electronic Publication: 2018 Feb 05.