Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Nedda F. Saremi"'
Autor:
Binsheng Gong, Dan Li, Yifan Zhang, Rebecca Kusko, Samir Lababidi, Zehui Cao, Mingyang Chen, Ning Chen, Qiaochu Chen, Qingwang Chen, Jiacheng Dai, Qiang Gan, Yuechen Gao, Mingkun Guo, Gunjan Hariani, Yujie He, Wanwan Hou, He Jiang, Garima Kushwaha, Jian-Liang Li, Jianying Li, Yulan Li, Liang-Chun Liu, Ruimei Liu, Shiming Liu, Edwin Meriaux, Mengqing Mo, Mathew Moore, Tyler J. Moss, Quanne Niu, Ananddeep Patel, Luyao Ren, Nedda F. Saremi, Erfei Shang, Jun Shang, Ping Song, Siqi Sun, Brent J. Urban, Danke Wang, Shangzi Wang, Zhining Wen, Xiangyi Xiong, Jingcheng Yang, Lihui Yin, Chao Zhang, Ruolan Zhang, Ambica Bhandari, Wanshi Cai, Agda Karina Eterovic, Dalila B. Megherbi, Tieliu Shi, Chen Suo, Ying Yu, Yuanting Zheng, Natalia Novoradovskaya, Renee L. Sears, Leming Shi, Wendell Jones, Weida Tong, Joshua Xu
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-9 (2024)
Abstract Accurate indel calling plays an important role in precision medicine. A benchmarking indel set is essential for thoroughly evaluating the indel calling performance of bioinformatics pipelines. A reference sample with a set of known-positive
Externí odkaz:
https://doaj.org/article/f6ac02a15b704d26872b588b34da0a59
Autor:
Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, Heather J. Milne, Stephen J. O’Brien, Brendan O’Connell, David P. Onorato, Seth P. D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell B. Corbett-Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Pumas are experiencing increased isolation as human persecution and habitat loss fragment the populations of this once widespread species. Here, the authors estimate the genomic consequences of this isolation by analyzing the genomes of ten pumas fro
Externí odkaz:
https://doaj.org/article/a3a54548bc5e4898a6632c025ce8f846
Autor:
Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, Heather J. Milne, Stephen J. O’Brien, Brendan O’Connell, David P. Onorato, Seth P. D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell B. Corbett-Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-1 (2019)
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Externí odkaz:
https://doaj.org/article/bac8f09561b840a1acc6d54f4b5bb380
Autor:
Richard E. Green, Brendan O'Connell, Beth Shapiro, Jonas Oppenheimer, Nedda F. Saremi, Li Yu, Christopher Vollmers, Shard A Milne, Oliver A. Ryder, Ashley Byrne
Publikováno v:
Journal of Heredity
The Journal of heredity, vol 112, iss 4
The Journal of heredity, vol 112, iss 4
The Andean bear is the only extant member of the Tremarctine subfamily and the only extant ursid species to inhabit South America. Here, we present an annotated de novo assembly of a nuclear genome from a captive-born female Andean bear, Mischief, ge
Autor:
Emily E. Puckett, Martin Sikora, James A. Cahill, Grant D. Zazula, Zhenquan Gu, Beth Shapiro, Richard Durbin, Mikkel Winther Pedersen, Joaquín Arroyo-Cabrales, Ciprian F. Ardelean, Joshua D. Kapp, Peter D. Heintzman, Zaruhi Vardanyan, Eske Willerslev, Lasse Vinner, Bianca De Sanctis, Ross D. E. MacPhee, Katherine L. Moon, Nedda F. Saremi
Publikováno v:
Pedersen, M W, De Sanctis, B, Saremi, N F, Sikora, M, Puckett, E E, Gu, Z, Moon, K L, Kapp, J D, Vinner, L, Vardanyan, Z, Ardelean, C F, Arroyo-Cabrales, J, Cahill, J A, Heintzman, P D, Zazula, G, MacPhee, R D E, Shapiro, B, Durbin, R & Willerslev, E 2021, ' Environmental genomics of Late Pleistocene black bears and giant short-faced bears ', Current Biology, vol. 31, no. 12, pp. 2728-2736.e8 . https://doi.org/10.1016/j.cub.2021.04.027
Analysis of ancient environmental DNA (eDNA) has revolutionized our ability to describe biological communities in space and time,1–3 by allowing for parallel sequencing of DNA from all trophic levels.4–8 However, because environmental samples con
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5397b309701ce4fa2dbdd69a4768a91e
https://curis.ku.dk/portal/da/publications/environmental-genomics-of-late-pleistocene-black-bears-and-giant-shortfaced-bears(ab7b7c66-a88e-4251-8380-a971e5beb6dc).html
https://curis.ku.dk/portal/da/publications/environmental-genomics-of-late-pleistocene-black-bears-and-giant-shortfaced-bears(ab7b7c66-a88e-4251-8380-a971e5beb6dc).html
Autor:
Evan Pepper-Tunick, Nedda F. Saremi, Jakob McBroome, Matthew Adams, Richard E. Green, Russell Corbett-Detig, Christopher Vollmers, Nicholas Maurer
Publikováno v:
Nucleic Acids Research
A high quality genome assembly is a vital first step for the study of an organism. Recent advances in technology have made the creation of high quality chromosome scale assemblies feasible and low cost. However, the amount of input DNA needed for an
Autor:
Andrew T. Ozga, Mary Thompson, Colin J. Shew, Mario dos Reis, Anne C. Stone, James C. Chatters, Beth Shapiro, Holly Heiniger, Philippe Gaubert, Josh Kapp, Graham Gower, Alan Cooper, Dmitry E. Taranenko, Alexander T. Salis, Alexandra Jamieson, James Haile, Kristofer M. Helgen, Julie Meachen, Alberto Carmagnini, M. Thomas P. Gilbert, Yaroslav V. Kuzmin, Audrey T. Lin, Carly Ameen, Pavel A. Kosintsev, Ardern Hulme-Beaman, Mikkel-Holger S. Sinding, Greger Larson, Keith Dobney, Alice Mouton, Nedda F. Saremi, Kieren J. Mitchell, Laurent A. F. Frantz, Katherine M. Skerry, Samantha Presslee, Sandra Álvarez-Carretero, Shyam Gopalakrishnan, Robert K. Wayne, Ekaterina Antipina, Blaire Van Valkenburgh, Allowen Evin, Pere Bover, Angela R. Perri, Matthew J. Collins, Anna Linderholm, Christian Carøe, Mikhail V. Sablin, Selina Brace, Blaine W. Schubert, José Alfredo Samaniego Castruita
Publikováno v:
Perri, A R, Mitchell, K J, Mouton, A, Alvarez-Carretero, S, Hulme-Beaman, A, Haile, J, Jamieson, A, Meachen, J, Lin, A T, Schubert, B W, Ameen, C, Antipina, E E, Bover, P, Brace, S, Carmagnini, A, Carøe, C, Samaniego Castruita, J A, Chatters, J C, Dobney, K, dos Reis, M, Evin, A, Gaubert, P, Gopalakrishnan, S, Gower, G, Heiniger, H, Helgen, K M, Kapp, J, Kosintsev, P A, Linderholm, A, Ozga, A T, Presslee, S, Salis, A T, Saremi, N F, Shew, C, Skerry, K, Taranenko, D E, Thompson, M, Sablin, M V, Kuzmin, Y V, Collins, M J, Sinding, M-H S, Gilbert, M T P, Stone, A C, Shapiro, B, Van Valkenburgh, B, Wayne, R K, Larson, G, Cooper, A & Frantz, L A F 2021, ' Dire wolves were the last of an ancient New World canid lineage ', Nature, vol. 591, pp. 87-91 . https://doi.org/10.1038/s41586-020-03082-x
Nature
Nature, 2021, 591 (7848), pp.87-91. ⟨10.1038/s41586-020-03082-x⟩
Nature, Nature Publishing Group, 2021, 591 (7848), pp.87-91. ⟨10.1038/s41586-020-03082-x⟩
NATURE
Zaguán. Repositorio Digital de la Universidad de Zaragoza
instname
Nature
Nature, 2021, 591 (7848), pp.87-91. ⟨10.1038/s41586-020-03082-x⟩
Nature, Nature Publishing Group, 2021, 591 (7848), pp.87-91. ⟨10.1038/s41586-020-03082-x⟩
NATURE
Zaguán. Repositorio Digital de la Universidad de Zaragoza
instname
Dire wolves are considered to be one of the most common and widespread large carnivores in Pleistocene America1, yet relatively little is known about their evolution or extinction. Here, to reconstruct the evolutionary history of dire wolves, we sequ
Autor:
Christopher Vollmers, Nicholas Maurer, Evan Pepper-Tunick, Jakob McBroome, Matthew Adams, Russell Corbett-Detig, Richard E. Green, Nedda F. Saremi
A high quality genome assembly is a vital first step for the study of an organism. Recent advances in technology have made the creation of high quality chromosome scale assemblies feasible and low cost. However, the amount of input DNA needed for an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea6897ef1578fa19378daad2c0c18f94
Autor:
Priscilla Marqui Schmidt Villela, Christopher C. Wilmers, Warren E. Johnson, Love Dalén, Daniel R. Stahler, Jeff A. Sikich, Christopher Vollmers, Robert K. Wayne, James A. Cahill, Richard E. Green, Russell Corbett-Detig, Beth Shapiro, Seth P. D. Riley, Megan A. Supple, Brendan O'Connell, Heather J. Milne, Eduardo Eizirik, Ashley Byrne, Nedda F. Saremi, Stephen J. O'Brien, Luiz Lehmann Coutinho, Henrique V. Figueiró, David P. Onorato
Publikováno v:
Nature communications, vol 10, iss 1
Nature Communications, Vol 10, Iss 1, Pp 1-1 (2019)
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature Communications, Vol 10, Iss 1, Pp 1-1 (2019)
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Author(s): Saremi, Nedda F; Supple, Megan A; Byrne, Ashley; Cahill, James A; Coutinho, Luiz Lehmann; Dalen, Love; Figueiro, Henrique V; Johnson, Warren E; Milne, Heather J; O'Brien, Stephen J; O'Connell, Brendan; Onorato, David P; Riley, Seth PD; Sik
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85f42250f2b38c9ffa94a3840e42c66b
https://escholarship.org/uc/item/1t29j9mk
https://escholarship.org/uc/item/1t29j9mk
Autor:
Heather J. Milne, Nedda F. Saremi, Christopher Vollmers, David P. Onorato, James A. Cahill, Seth P. D. Riley, Richard E. Green, Stephen J. O'Brien, Brendan O'Connell, Warren E. Johnson, Daniel R. Stahler, Jeff A. Sikich, Robert K. Wayne, Love Dalén, Henrique V. Figueiró, Luiz Lehmann Coutinho, Eduardo Eizirik, Ashley Byrne, Megan A. Supple, Priscilla Marqui Schmidt Villela, Beth Shapiro, Russell Corbett-Detig, Christopher C. Wilmers
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Nature communications, vol 10, iss 1
Nature Communications
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature communications, vol 10, iss 1
Nature Communications
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Pumas are the most widely distributed felid in the Western Hemisphere. Increasingly, however, human persecution and habitat loss are isolating puma populations. To explore the genomic consequences of this isolation, we assemble a draft puma genome an