A community-powered search of machine learning strategy space to find NMR property prediction models

Autor: Zico Kolter, Mordechai Kornbluth, Sanghoon Kim, Lars Andersen Bratholm, Risi Kondor, Jonathan P. Mailoa, Youngsoo Lee, Lam Dang, Goran Rakocevic, Brandon Anderson, Shaojie Bai, Will Gerrard, Milos R. Popovic, David R. Glowacki, Sunghwan Choi, Craig P. Butts, Thanh Tu Nguyen, Devin Willmott, Erik H. Thiede, Luka Stojanovic, Youhan Lee, Nebojsa Tijanic, Addison Howard, Wonho Song, Walter Reade, Andres Torrubia, Pavel Hanchar

Publikováno v: PLoS ONE, Vol 16, Iss 7, p e0253612 (2021)
Bratholm, L A, Gerrard, W, Anderson, B, Bai, S, Choi, S, Dang, L, Hanchar, P, Howard, A, Kim, S, Kolter, Z, Kondor, R, Kornbluth, M, Lee, Y, Lee, Y, Mailoa, J P, Nguyen, T T, Popovic, M, Rakocevic, G, Reade, W, Song, W, Stojanovic, L, Thiede, E H, Tijanic, N, Torrubia, A, Willmott, D, Butts, C P & Glowacki, D R 2021, ' A community-powered search of machine learning strategy space to find NMR property prediction models ', PLoS ONE, vol. 16, no. 7, e0253612 . https://doi.org/10.1371/journal.pone.0253612
PLoS ONE

The rise of machine learning (ML) has created an explosion in the potential strategies for using data to make scientific predictions. For physical scientists wishing to apply ML strategies to a particular domain, it can be difficult to assess in adva

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::672ab3f6c2ed91044cbf5995b3323ede
http://arxiv.org/abs/2008.05994

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

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Zechen, Chong, Oliver, Drechsel, Lewis Jonathan Dursi, Roland, Eils, Shadrielle M, G Espiritu, Robert, S Fulton, Shengjie, Gao, Josep L, L Gelpi, Mark, B Gerstein, Santiago, Gonzalez, Ivo, G Gut, Faraz, Hach, Michael, C Heinold, Jonathan, Hinton, Taobo, Hu, Vincent, Huang, Huang, Yi, Barbara, Hutter, David, R Jones, Jongsun, Jung, Natalie, Jäger, Hyung-Lae, Kim, Kortine, Kleinheinz, Sushant, Kumar, Yogesh, Kumar, Christopher, M Lalansingh, Ivica, Letunic, Dimitri, Livitz, Eric, Z Ma, Yosef, E Maruvka, R Jay Mashl, Andrew, Menzies, Ana, Milovanovic, Morten Muhlig Nielsen, Stephan, Ossowski, Nagarajan, Paramasivam, Jakob Skou Pedersen, Marc, D Perry, Montserrat, Puiggròs, Keiran, M Raine, Esther, Rheinbay, Romina, Royo, S Cenk Sahinalp, Iman, Sarrafi, Matthias, Schlesner, Jared, T Simpson, Lucy, Stebbings, Miranda, D Stobbe, Jon, W Teague, Grace, Tiao, David, Torrents, Jeremiah, A Wala, Jiayin, Wang, Sebastian, M Waszak, Joachim, Weischenfeldt, Michael, C Wendl, Johannes, Werner, 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Publikováno v: Nature Communications, 11(1):4748. Nature Publishing Group
Nature communications, 11(1):4748. Nature Publishing Group
Nature communications, 11 (1
NATURE COMMUNICATIONS
Nature Communications, 11 (1)
Nature Communications, Vol 11, Iss 1, Pp 1-27 (2020)
Bailey, M H, Meyerson, W U, Dursi, L J, Wang, L B, Dong, G, Liang, W W, Weerasinghe, A, Li, S, Kelso, S, Akbani, R, Anur, P, Bailey, M H, Buchanan, A, Chiotti, K, Covington, K, Creason, A, Ding, L, Weischenfeldt, J, Brunak, S, Ding, L, Favero, F, MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium 2020, ' Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples ', Nature Communications, vol. 11, no. 1, 4748 . https://doi.org/10.1038/s41467-020-18151-y
Bailey, Matthew H; Meyerson, William U; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Kelso, Sean; Saksena, Gordon; Ellrott, Kyle; Wendl, Michael C; Wheeler, David A; Getz, Gad; Simpson, Jared T; Gerstein, Mark B; Ding, Li (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1), p. 4748. Springer Nature 10.1038/s41467-020-18151-y
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Nature Communications, 11
RUO: Repositorio Institucional de la Universidad de Oviedo
Universidad de Oviedo (UNIOVI)
Bailey, M H, Meyerson, W U, Dursi, L J, Wang, L B, Dong, G, Liang, W W, Weerasinghe, A, Li, S, Kelso, S, Akbani, R, Anur, P, Bailey, M H, Buchanan, A, Chiotti, K, Covington, K, Creason, A, Ding, L, MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium 2020, ' Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples ', Nature Communications, vol. 11, no. 1, 4748 . https://doi.org/10.1038/s41467-020-18151-y
Recercat: Dipósit de la Recerca de Catalunya
Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)

MC3 Working Group: Rehan Akbani21, Pavana Anur22, Matthew H. Bailey1,2,3, Alex Buchanan9, Kami Chiotti9, Kyle Covington12,23, Allison Creason9, Li Ding1,2,3,20, Kyle Ellrott9, Yu Fan21, Steven Foltz1,2, Gad Getz8,14,15,16, Walker Hale12, David Haussl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::79caf69aa08507159a37977adcb4937b
https://www.bib.irb.hr/1104730

A community-powered search of machine learning strategy space to find NMR property prediction models.

Autor: Bratholm, Lars A.^1,2 (AUTHOR) lars.bratholm@bristol.ac.uk, Gerrard, Will¹ (AUTHOR), Anderson, Brandon^3,4,5 (AUTHOR), Bai, Shaojie^6,7 (AUTHOR), Choi, Sunghwan⁸ (AUTHOR), Dang, Lam⁹ (AUTHOR), Hanchar, Pavel¹⁰ (AUTHOR), Howard, Addison¹¹ (AUTHOR), Kim, Sanghoon¹² (AUTHOR), Kolter, Zico^6,7 (AUTHOR), Kondor, Risi^3,4,13 (AUTHOR), Kornbluth, Mordechai¹⁴ (AUTHOR), Lee, Youhan¹⁵ (AUTHOR), Lee, Youngsoo¹⁶ (AUTHOR), Mailoa, Jonathan P.¹⁴ (AUTHOR), Nguyen, Thanh Tu⁹ (AUTHOR), Popovic, Milos¹⁷ (AUTHOR), Rakocevic, Goran¹⁷ (AUTHOR), Reade, Walter¹¹ (AUTHOR), Song, Wonho¹⁸ (AUTHOR)

Publikováno v: PLoS ONE. 7/20/2021, Vol. 16 Issue 7, p1-16. 16p.

Butler enables rapid cloud-based analysis of thousands of human genomes.

Autor: Yakneen, Sergei, Waszak, Sebastian M., PCAWG Technical Working Group, Aminou, Brice, Bartolome, Javier, Boroevich, Keith A., Boyce, Rich, Brooks, Angela N., Buchanan, Alex, Buchhalter, Ivo, Butler, Adam P., Byrne, Niall J., Cafferkey, Andy, Campbell, Peter J., Chen, Zhaohong, Cho, Sunghoon, Choi, Wan, Clapham, Peter, Davis-Dusenbery, Brandi N., De La Vega, Francisco M.

Publikováno v: Nature Biotechnology; Mar2020, Vol. 38 Issue 3, p288-292, 5p, 1 Diagram, 1 Graph

Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.

Autor: Yakneen, Sergei, Waszak, Sebastian M., PCAWG Technical Working Group, Aminou, Brice, Bartolome, Javier, Boroevich, Keith A., Boyce, Rich, Brooks, Angela N., Buchanan, Alex, Buchhalter, Ivo, Butler, Adam P., Byrne, Niall J., Cafferkey, Andy, Campbell, Peter J., Chen, Zhaohong, Cho, Sunghoon, Choi, Wan, Clapham, Peter, Davis-Dusenbery, Brandi N., De La Vega, Francisco M.

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