Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA

Autor: Altajar, Ahmad, DeJesus, Alexandra, Brito, Anderson, Watkins, Anne E., Muyombwe, Anthony, Blumenstiel, Brendan S., Neal, Caleb, Kalinich, Chaney C., Liu, Chen, Loreth, Christine, Castaldi, Christopher, Pearson, Claire, Bernard, Clare, Nolet, Corey M., Ferguson, David, Buzby, Erika, Laszlo, Eva, Reagan, Faye L., Vicente, Gina, Rooke, Heather M., Munger, Heidi, Johnson, Hillary, Tikhonova, Irina R., Ott, Isabel M., Razeq, Jafar, Meldrim, James C., Brown, Jessica, Wang, Jianhui, Vostok, Johanna, Beauchamp, John P., Grimsby, Jonna L., Hall, Joshua, Messer, Katelyn S., Larkin, Katie L., Vernest, Kyle, Madoff, Lawrence C., Green, Lisa M., Webber, Lori, Gagne, Luc, Ulcena, Maesha A., Ray, Marianne C., Fisher, Marissa E., Barter, Mary, Lee, Matthew D., DeFelice, Matthew T., Cipicchio, Michelle C., Smith, Natasha L., Lennon, Niall J., Fitzgerald, Nicholas A., Kerantzas, Nicholas, Hui, Pei, Harrington, Rachel, Downing, Randy, Haye, Rashida, Lynch, Ryan, Anderson, Scott E., Hennigan, Scott, English, Sean, Cofsky, Seana, Clancy, Selina, Mane, Shrikant, Ash, Stephanie, Baez, Stephanie, Fleming, Steve, Murphy, Steven, Chaluvadi, Sushma, Alpert, Tara, Rivard, Trevor, Schulz, Wade, Mandese, Zoe M., Earnest, Rebecca, Uddin, Rockib, Matluk, Nicholas, Renzette, Nicholas, Turbett, Sarah E., Siddle, Katherine J., Adams, Gordon, Tomkins-Tinch, Christopher H., Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Koch, Robert Tobias, Billig, Kendall, Fauver, Joseph R., Vogels, Chantal B.F., Bilguvar, Kaya, De Kumar, Bony, Landry, Marie L., Peaper, David R., Kelly, Kevin, Omerza, Greg, Grieser, Heather, Meak, Sim, Martha, John, Dewey, Hannah B., Kales, Susan, Berenzy, Daniel, Carpenter-Azevedo, Kristin, King, Ewa, Huard, Richard C., Novitsky, Vlad, Howison, Mark, Darpolor, Josephine, Manne, Akarsh, Kantor, Rami, Smole, Sandra C., Brown, Catherine M., Fink, Timelia, Lang, Andrew S., Gallagher, Glen R., Pitzer, Virginia E., Sabeti, Pardis C., Gabriel, Stacey, MacInnis, Bronwyn L., Tewhey, Ryan, Adams, Mark D., Park, Daniel J., Lemieux, Jacob E., Grubaugh, Nathan D.

Publikováno v: In Cell Reports Medicine 19 April 2022 3(4)

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2

Autor: Vogels, Chantal BF, Breban, Mallery I, Ott, Isabel M, Alpert, Tara, Petrone, Mary E, Watkins, Anne E, Kalinich, Chaney C, Earnest, Rebecca, Rothman, Jessica E, Goes de Jesus, Jaqueline, Morales Claro, Ingra, Magalhães Ferreira, Giulia, Crispim, Myuki AE, Brazil-UK CADDE Genomic Network, Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J, Network for Genomic Surveillance in South Africa, Hodcroft, Emma B, Mason, Christopher E, Khullar, Gaurav, Metti, Jessica, Dudley, Joel T, MacKay, Matthew J, Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R, Sabino, Ester C, Neher, Richard A, Fauver, Joseph R, Grubaugh, Nathan D

With the emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) variants that may increase transmissibility and/or cause escape from immune responses, there is an urgent need for the targeted surveillance of circulating lineages. I

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Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA

Autor: Earnest, Rebecca, Uddin, Rockib, Matluk, Nicholas, Renzette, Nicholas, Turbett, Sarah E., Siddle, Katherine J., Loreth, Christine, Adams, Gordon, Tomkins-Tinch, Christopher H., Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Koch, Robert Tobias, Billig, Kendall, Fauver, Joseph R., Vogels, Chantal B.F., Bilguvar, Kaya, De Kumar, Bony, Landry, Marie L., Peaper, David R., Kelly, Kevin, Omerza, Greg, Grieser, Heather, Meak, Sim, Martha, John, Dewey, Hannah B., Kales, Susan, Berenzy, Daniel, Carpenter-Azevedo, Kristin, King, Ewa, Huard, Richard C., Novitsky, Vlad, Howison, Mark, Darpolor, Josephine, Manne, Akarsh, Kantor, Rami, Smole, Sandra C., Brown, Catherine M., Fink, Timelia, Lang, Andrew S., Gallagher, Glen R., Pitzer, Virginia E., Sabeti, Pardis C., Gabriel, Stacey, MacInnis, Bronwyn L., Altajar, Ahmad, DeJesus, Alexandra, Brito, Anderson, Watkins, Anne E., Muyombwe, Anthony, Blumenstiel, Brendan S., Neal, Caleb, Kalinich, Chaney C., Liu, Chen, Loreth, Christine, Castaldi, Christopher, Pearson, Claire, Bernard, Clare, Nolet, Corey M., Ferguson, David, Buzby, Erika, Laszlo, Eva, Reagan, Faye L., Vicente, Gina, Rooke, Heather M., Munger, Heidi, Johnson, Hillary, Tikhonova, Irina R., Ott, Isabel M., Razeq, Jafar, Meldrim, James C., Brown, Jessica, Wang, Jianhui, Vostok, Johanna, Beauchamp, John P., Grimsby, Jonna L., Hall, Joshua, Messer, Katelyn S., Larkin, Katie L., Vernest, Kyle, Madoff, Lawrence C., Green, Lisa M., Webber, Lori, Gagne, Luc, Ulcena, Maesha A., Ray, Marianne C., Fisher, Marissa E., Barter, Mary, Lee, Matthew D., DeFelice, Matthew T., Cipicchio, Michelle C., Smith, Natasha L., Lennon, Niall J., Fitzgerald, Nicholas A., Kerantzas, Nicholas, Hui, Pei, Harrington, Rachel, Downing, Randy, Haye, Rashida, Lynch, Ryan, Anderson, Scott E., Hennigan, Scott, English, Sean, Cofsky, Seana, Clancy, Selina, Mane, Shrikant, Ash, Stephanie, Baez, Stephanie, Fleming, Steve, Murphy, Steven, Chaluvadi, Sushma, Alpert, Tara, Rivard, Trevor, Schulz, Wade, Mandese, Zoe M., Tewhey, Ryan, Adams, Mark D., Park, Daniel J., Lemieux, Jacob E., Grubaugh, Nathan D.

Publikováno v: Cell Reports Medicine; 20220101, Issue: Preprints

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.

Autor: Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Watkins AE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Earnest R; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Rothman JE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Goes de Jesus J; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Morales Claro I; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Magalhães Ferreira G; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.; Laboratório de Virologia, Instituto de Ciências Biomédicas, Universidade Federal de Uberlândia, Uberlândia, Minas Gerais, Brazil., Crispim MAE; Fundação Hospitalar de Hematologia e Hemoterapia do Amazonas, Manaus, Brazil., Singh L; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Anyaneji UJ; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Hodcroft EB; Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland., Mason CE; Tempus Labs, Chicago, Illinois, United States of America., Khullar G; Tempus Labs, Chicago, Illinois, United States of America., Metti J; Tempus Labs, Chicago, Illinois, United States of America., Dudley JT; Tempus Labs, Chicago, Illinois, United States of America., MacKay MJ; Tempus Labs, Chicago, Illinois, United States of America., Nash M; Tempus Labs, Chicago, Illinois, United States of America., Wang J; Department of Pathology, Yale University School of Medicine, New Haven, Connecticut, United States of America., Liu C; Department of Pathology, Yale University School of Medicine, New Haven, Connecticut, United States of America., Hui P; Department of Pathology, Yale University School of Medicine, New Haven, Connecticut, United States of America., Murphy S; Murphy Medical Associates, Greenwich, Connecticut, United States of America., Neal C; Murphy Medical Associates, Greenwich, Connecticut, United States of America., Laszlo E; Murphy Medical Associates, Greenwich, Connecticut, United States of America., Landry ML; Departments of Laboratory Medicine and Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America., Muyombwe A; Connecticut State Department of Public Health, Rocky Hill, Connecticut, United States of America., Downing R; Connecticut State Department of Public Health, Rocky Hill, Connecticut, United States of America., Razeq J; Connecticut State Department of Public Health, Rocky Hill, Connecticut, United States of America., de Oliveira T; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Faria NR; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.; MRC Centre for Global Infectious Disease Analysis, J-IDEA, Imperial College London, London, United Kingdom.; Department of Zoology, University of Oxford, Oxford, United Kingdom., Sabino EC; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Neher RA; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.

Publikováno v: PLoS biology [PLoS Biol] 2021 May 07; Vol. 19 (5), pp. e3001236. Date of Electronic Publication: 2021 May 07 (Print Publication: 2021).