Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates.

Autor: Gladstone RA; Parasites and microbes, Wellcome Sanger InstituteHinxton, UK., Lo SW; Parasites and microbes, Wellcome Sanger InstituteHinxton, UK., Goater R; Centre for Genomic Pathogen Surveillance, Wellcome Genome CampusHinxton, UK.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK., Yeats C; Centre for Genomic Pathogen Surveillance, Wellcome Genome CampusHinxton, UK.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK., Taylor B; Centre for Genomic Pathogen Surveillance, Wellcome Genome CampusHinxton, UK.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK., Hadfield J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Lees JA; Faculty of Medicine, School of Public Health, Imperial College London, UK., Croucher NJ; Faculty of Medicine, School of Public Health, Imperial College London, UK., van Tonder AJ; Parasites and microbes, Wellcome Sanger InstituteHinxton, UK.; Department of Veterinary Medicine, University of Cambridge, Cambridge, UK., Bentley LJ; Parasites and microbes, Wellcome Sanger InstituteHinxton, UK., Quah FX; Parasites and microbes, Wellcome Sanger InstituteHinxton, UK., Blaschke AJ; Division of Pediatric Infectious Diseases, Department of Pediatrics, School of Medicine, University of Utah, 295 Chipeta Way, Salt Lake City, UT, 84108, USA., Pershing NL; Division of Pediatric Infectious Diseases, Department of Pediatrics, School of Medicine, University of Utah, 295 Chipeta Way, Salt Lake City, UT, 84108, USA., Byington CL; University of California Health, Oakland, CA, USA., Balaji V; Christian Medical College, Vellore, India., Hryniewicz W; National Medicines Institute, Division of Clinical Microbiology and Infection Prevention, Warsaw, Poland., Sigauque B; Fundação Manhiça / Centro de Investigação em Saúde da Manhiça (CISM), Maputo Mozambique, Instituto Nacional de Saúde, inistério de Saúde, Maputo, Mozambique., Ravikumar KL; Central Research Laboratory, Department of Microbiology, Kempegowda Institute of Medical Sciences Hospital & Research Center, Bangalore, India., Almeida SCG; Center of Bacteriology, Adolfo Lutz Institute, São Paulo, Brazil., Ochoa TJ; Instituto de Medicina Tropical, Universidad Peruana Cayetano Heredia, Lima, Peru., Ho PL; Department of Microbiology and Carol Yu Centre for Infection, The University of Hong Kong, Queen Mary Hospital, Hong Kong, PR China., du Plessis M; Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, Johannesburg, South Africa., Ndlangisa KM; Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, Johannesburg, South Africa., Cornick JE; Malawi-Liverpool-Wellcome-Trust, Malawi., Kwambana-Adams B; NIHR Global Health Research Unit on Mucosal Pathogens, Division of Infection and Immunity, University College London, London, UK.; WHO Collaborating Centre for New Vaccines Surveillance, Medical Research Council Unit The Gambia at The London School of Hygiene & Tropical Medicine, Fajara, The Gambia., Benisty R; The Faculty of Health Sciences, Ben-Gurion University of the NegevBeer-Sheva, Israel., Nzenze SA; Medical Research Council: Respiratory and Meningeal Pathogens Research Unit, University of the Witwatersrand, Johannesburg, South Africa.; Department of Science and Technology/National Research Foundation: Vaccine Preventable Diseases, University of the Witwatersrand, Johannesburg, South Africa., Madhi SA; Medical Research Council: Respiratory and Meningeal Pathogens Research Unit, University of the Witwatersrand, Johannesburg, South Africa.; Department of Science and Technology/National Research Foundation: Vaccine Preventable Diseases, University of the Witwatersrand, Johannesburg, South Africa., Hawkins PA; Rollins School Public Health, Emory University, GA, USA., Pollard AJ; Oxford Vaccine Group, Department of Paediatrics, University of Oxford, and the NIHR Oxford Biomedical Research Centre, Oxford, UK., Everett DB; Queens Research Institute, University of Edinburgh, UK., Antonio M; WHO Collaborating Centre for New Vaccines Surveillance, Medical Research Council Unit The Gambia at The London School of Hygiene & Tropical Medicine, Fajara, The Gambia., Dagan R; The Faculty of Health Sciences, Ben-Gurion University of the NegevBeer-Sheva, Israel., Klugman KP; Rollins School Public Health, Emory University, GA, USA., von Gottberg A; Department of Microbiology and Carol Yu Centre for Infection, The University of Hong Kong, Queen Mary Hospital, Hong Kong, PR China., Metcalf BJ; Centers for Disease Control and Prevention, Atlanta, GA, USA., Li Y; Centers for Disease Control and Prevention, Atlanta, GA, USA., Beall BW; Centers for Disease Control and Prevention, Atlanta, GA, USA., McGee L; Centers for Disease Control and Prevention, Atlanta, GA, USA., Breiman RF; Rollins School Public Health, Emory University, GA, USA.; Emory Global Health Institute, Atlanta, GA, USA., Aanensen DM; Centre for Genomic Pathogen Surveillance, Wellcome Genome CampusHinxton, UK.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK., Bentley SD; Parasites and microbes, Wellcome Sanger InstituteHinxton, UK., The Global Pneumococcal Sequencing Consortium; See the full list of the The Global Pneumococcal Sequencing Consortium members, in acknowledgements.

Publikováno v: Microbial genomics [Microb Genom] 2020 May; Vol. 6 (5). Date of Electronic Publication: 2020 Apr 29.

Population snapshot of Streptococcus pneumoniae causing invasive disease in South Africa prior to introduction of pneumococcal conjugate vaccines.

Autor: Ndlangisa KM; Centre for Respiratory Diseases and Meningitis (CRDM), National Institute for Communicable Diseases (NICD), a division of the National Health Laboratory Service, Johannesburg, South Africa; Respiratory and Meningeal Pathogens Research Unit, University of the Witwatersrand, Johannesburg, South Africa; Medical Research Council, Johannesburg, South Africa., du Plessis M; Centre for Respiratory Diseases and Meningitis (CRDM), National Institute for Communicable Diseases (NICD), a division of the National Health Laboratory Service, Johannesburg, South Africa; Respiratory and Meningeal Pathogens Research Unit, University of the Witwatersrand, Johannesburg, South Africa; Medical Research Council, Johannesburg, South Africa., Wolter N; Centre for Respiratory Diseases and Meningitis (CRDM), National Institute for Communicable Diseases (NICD), a division of the National Health Laboratory Service, Johannesburg, South Africa; Respiratory and Meningeal Pathogens Research Unit, University of the Witwatersrand, Johannesburg, South Africa; Medical Research Council, Johannesburg, South Africa., de Gouveia L; Centre for Respiratory Diseases and Meningitis (CRDM), National Institute for Communicable Diseases (NICD), a division of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Johannesburg, South Africa., Klugman KP; Centre for Respiratory Diseases and Meningitis (CRDM), National Institute for Communicable Diseases (NICD), a division of the National Health Laboratory Service, Johannesburg, South Africa; Hubert Department of Global Health, Rollins School of Public Health, and Division of Infectious Diseases, School of Medicine, Emory University, Atlanta, Georgia, United States of America., von Gottberg A; Centre for Respiratory Diseases and Meningitis (CRDM), National Institute for Communicable Diseases (NICD), a division of the National Health Laboratory Service, Johannesburg, South Africa; Respiratory and Meningeal Pathogens Research Unit, University of the Witwatersrand, Johannesburg, South Africa; Medical Research Council, Johannesburg, South Africa.

Publikováno v: PloS one [PLoS One] 2014 Sep 18; Vol. 9 (9), pp. e107666. Date of Electronic Publication: 2014 Sep 18 (Print Publication: 2014).