Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Nathaniel S. Pope"'
Autor:
Erin R. Zylstra, Linda J. Allison, Roy C. Averill‐Murray, Vincent Landau, Nathaniel S. Pope, Robert J. Steidl
Publikováno v:
Ecosphere, Vol 14, Iss 3, Pp n/a-n/a (2023)
Abstract Estimating population density and identifying those areas where density is changing through time are central to prioritizing conservation and management strategies. Obtaining reliable estimates of density and trends can be challenging, howev
Externí odkaz:
https://doaj.org/article/7d4c231d444044598a941f4dfca6819b
Autor:
Kimberly M. Ballare, Nathaniel S. Pope, Antonio R. Castilla, Sarah Cusser, Richard P. Metz, Shalene Jha
Publikováno v:
Ecology and Evolution, Vol 9, Iss 24, Pp 13690-13705 (2019)
Abstract DNA sequencing technologies continue to advance the biological sciences, expanding opportunities for genomic studies of non‐model organisms for basic and applied questions. Despite these opportunities, many next generation sequencing proto
Externí odkaz:
https://doaj.org/article/f734dff8a9074407b9b53e008caa2b11
Autor:
Rodolfo Jaffé, Jamille C. Veiga, Nathaniel S. Pope, Éder C. M. Lanes, Carolina S. Carvalho, Ronnie Alves, Sónia C. S. Andrade, Maria C. Arias, Vanessa Bonatti, Airton T. Carvalho, Marina S. deCastro, Felipe A. L. Contrera, Tiago M. Francoy, Breno M. Freitas, Tereza C. Giannini, Michael Hrncir, Celso F. Martins, Guilherme Oliveira, Antonio M. Saraiva, Bruno A. Souza, Vera L. Imperatriz‐Fonseca
Publikováno v:
Evolutionary Applications, Vol 12, Iss 6, Pp 1164-1177 (2019)
Abstract Habitat degradation and climate change are currently threatening wild pollinators, compromising their ability to provide pollination services to wild and cultivated plants. Landscape genomics offers powerful tools to assess the influence of
Externí odkaz:
https://doaj.org/article/a668f5fa03d448edbe674f1b374d5812
Autor:
Éder C. Lanes, Nathaniel S. Pope, Ronnie Alves, Nelson M. Carvalho Filho, Tereza C. Giannini, Ana M. Giulietti, Vera L. Imperatriz-Fonseca, Waléria Monteiro, Guilherme Oliveira, Amanda R. Silva, José O. Siqueira, Pedro W. Souza-Filho, Santelmo Vasconcelos, Rodolfo Jaffé
Publikováno v:
Frontiers in Plant Science, Vol 9 (2018)
Although genetic diversity ultimately determines the ability of organisms to adapt to environmental changes, conservation assessments like the widely used International Union for Conservation of Nature (IUCN) Red List Criteria do not explicitly consi
Externí odkaz:
https://doaj.org/article/ac9b7711e2794d4290754e69ba8f5b79
Autor:
Erin R. Zylstra, Linda J. Allison, Roy C. Averill‐Murray, Vincent Landau, Nathaniel S. Pope, Robert J. Steidl
Publikováno v:
Ecosphere. 14
Autor:
M. Elise Lauterbur, Maria Izabel A. Cavassim, Ariella L. Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos, Jeff Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C. Haller, Ahmed R. Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obšteter, Vitor Antonio Corrêa Pavinato, Alice Pearson, David Peede, Manolo F. Perez, Murillo F. Rodrigues, Chris C. R. Smith, Jeffrey P. Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K. Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A. Cartwright, Gregor Gorjanc, Ryan N. Gutenkunst, Jerome Kelleher, Andrew D. Kern, Aaron P. Ragsdale, Peter L. Ralph, Daniel R. Schrider, Ilan Gronau
Publikováno v:
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLIFE, vol. 12, no. RP84874, pp. 1-20 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874
Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic data sets remains a major obstacle. Today, more realistic simulations are po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8243d8d49970ab6eb1bb1ba7366c0d8f
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508060
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508060
Autor:
Sydney A. Bird, Nathaniel S. Pope, Carley M. McGrady, Shelby J. Fleischer, Margarita M. López-Uribe
Bumble bees (genus Bombus) includes approximately 250 social species, many of which are in decline in North America and Europe. To estimate colony abundance of bumble bees in natural and agricultural habitats, sib-ship relationships are often reconst
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9f0928121fbf846be8cea7a6cf5fb100
https://doi.org/10.21203/rs.3.rs-2076117/v1
https://doi.org/10.21203/rs.3.rs-2076117/v1
Autor:
Franz Baumdicker, Gertjan Bisschop, Daniel Goldstein, Graham Gower, Aaron P Ragsdale, Georgia Tsambos, Sha Zhu, Bjarki Eldon, E Castedo Ellerman, Jared G Galloway, Ariella L Gladstein, Gregor Gorjanc, Bing Guo, Ben Jeffery, Warren W Kretzschumar, Konrad Lohse, Michael Matschiner, Dominic Nelson, Nathaniel S Pope, Consuelo D Quinto-Cortés, Murillo F Rodrigues, Kumar Saunack, Thibaut Sellinger, Kevin Thornton, Hugo van Kemenade, Anthony W Wohns, Yan Wong, Simon Gravel, Andrew D Kern, Jere Koskela, Peter L Ralph, Jerome Kelleher
Publikováno v:
Baumdicker, F, Bisschop, G, Goldstein, D, Gower, G, Ragsdale, A P, Tsambos, G, Zhu, S, Eldon, B, Ellerman, E C, Galloway, J G, Gladstein, A L, Gorjanc, G, Guo, B, Jeffery, B, Kretzschumar, W W, Lohse, K, Matschiner, M, Nelson, D, Pope, N S, Quinto-Cortes, C D, Rodrigues, M F, Saunack, K, Sellinger, T, Thornton, K, Van Kemenade, H, Wohns, A W, Wong, Y, Gravel, S, Kern, A D, Koskela, J, Ralph, P L & Kelleher, J 2022, ' Efficient ancestry and mutation simulation with msprime 1.0 ', Genetics, vol. 220, no. 3, iyab229 . https://doi.org/10.1093/genetics/iyab229
Genetics, vol 220, iss 3
Baumdicker, F, Bisschop, G, Goldstein, D, Gower, G, Ragsdale, A P, Tsambos, G, Zhu, S, Eldon, B, Ellerman, C E, Galloway, J G, Gladstein, A L, Gorjanc, G, Guo, B, Jeffery, B, Kretzschmar, W W, Lohse, K, Matschiner, M, Nelson, D, Pope, N S, Quinto-Cortés, C D, Rodrigues, M F, Saunack, K, Sellinger, T, Thornton, K, van Kemenade, H, Wohns, A W, Wong, H Y, Gravel, S, Kern, A D, Koskela, J, Ralph, P L & Kelleher, J 2021, ' Efficient ancestry and mutation simulation with msprime 1.0 ', Genetics . https://doi.org/10.1093/genetics/iyab229
Genetics
Genetics, vol 220, iss 3
Baumdicker, F, Bisschop, G, Goldstein, D, Gower, G, Ragsdale, A P, Tsambos, G, Zhu, S, Eldon, B, Ellerman, C E, Galloway, J G, Gladstein, A L, Gorjanc, G, Guo, B, Jeffery, B, Kretzschmar, W W, Lohse, K, Matschiner, M, Nelson, D, Pope, N S, Quinto-Cortés, C D, Rodrigues, M F, Saunack, K, Sellinger, T, Thornton, K, van Kemenade, H, Wohns, A W, Wong, H Y, Gravel, S, Kern, A D, Koskela, J, Ralph, P L & Kelleher, J 2021, ' Efficient ancestry and mutation simulation with msprime 1.0 ', Genetics . https://doi.org/10.1093/genetics/iyab229
Genetics
Stochastic simulation is a key tool in population genetics, since the models involved are often analytically intractable and simulation is usually the only way of obtaining ground-truth data to evaluate inferences. Because of this, a large number of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c7439e58fcb46e9b578064c6e55e95f
http://wrap.warwick.ac.uk/161035/13/WRAP-efficient-ancestry-mutation-simulation-msprime-1.0-2022.pdf
http://wrap.warwick.ac.uk/161035/13/WRAP-efficient-ancestry-mutation-simulation-msprime-1.0-2022.pdf
Autor:
Nathaniel S. Pope, Antonio R. Castilla, Kimberly M. Ballare, Shalene Jha, Sarah Cusser, Richard P. Metz
Publikováno v:
Ecology and Evolution, Vol 9, Iss 24, Pp 13690-13705 (2019)
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Ecology and Evolution
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Ecology and Evolution
DNA sequencing technologies continue to advance the biological sciences, expanding opportunities for genomic studies of non‐model organisms for basic and applied questions. Despite these opportunities, many next generation sequencing protocols have
Autor:
Castedo E. Ellerman, Kevin R. Thornton, Daniel Goldstein, Simon Gravel, Jared Galloway, Jere Koskela, Andrew D. Kern, Graham Gower, Ariella L. Gladstein, Nathaniel S. Pope, Gregor Gorjanc, Franz Baumdicker, Gertjan Bisschop, Dominic Nelson, Georgia Tsambos, Bjarki Eldon, Michael Matschiner, Aaron P. Ragsdale, Thibaut Paul Patrick Sellinger, Peter L. Ralph, H. Yan Wong, Anthony Wilder Wohns, Jerome Kelleher, Kumar Saunack, Murillo F. Rodrigues, Sha Zhu, Warren W. Kretzschmar, Bing Guo, Ben Jeffery, Konrad Lohse, Hugo van Kemenade, Consuelo D. Quinto-Cortés
Stochastic simulation is a key tool in population genetics, since the models involved are often analytically intractable and simulation is usually the only way of obtaining ground-truth data to evaluate inferences. Because of this necessity, a large
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::79fb7a04db84d551d91aa4848f5f789c
https://doi.org/10.1101/2021.08.31.457499
https://doi.org/10.1101/2021.08.31.457499