The complete genome sequence of elite bread wheat cultivar, 'Sonmez' [version 1; peer review: 3 approved]

Autor: Hikmet Budak, Valerie Barbe, Nathan Watson-Haigh, Ute Baumann, Bala Ani Akpinar, Philippe Leroy

Publikováno v: F1000Research, Vol 11 (2022)

High-yielding crop varieties will become critical in meeting the future food demand in the face of worsening weather extremes and threatening biotic stressors. The bread wheat cultivar Sonmez-2001 is a registered variety that is notable for its perfo

Externí odkaz: https://doaj.org/article/3f0e5bba8beb40f99b7789eb3614a8c0

Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome

Autor: Gabriel Keeble-Gagnère, Philippe Rigault, Josquin Tibbits, Raj Pasam, Matthew Hayden, Kerrie Forrest, Zeev Frenkel, Abraham Korol, B. Emma Huang, Colin Cavanagh, Jen Taylor, Michael Abrouk, Andrew Sharpe, David Konkin, Pierre Sourdille, Benoît Darrier, Frédéric Choulet, Aurélien Bernard, Simone Rochfort, Adam Dimech, Nathan Watson-Haigh, Ute Baumann, Paul Eckermann, Delphine Fleury, Angela Juhasz, Sébastien Boisvert, Marc-Alexandre Nolin, Jaroslav Doležel, Hana Šimková, Helena Toegelová, Jan Šafář, Ming-Cheng Luo, Francisco Câmara, Matthias Pfeifer, Don Isdale, Johan Nyström-Persson, IWGSC, Dal-Hoe Koo, Matthew Tinning, Dangqun Cui, Zhengang Ru, Rudi Appels

Publikováno v: Genome Biology, Vol 19, Iss 1, Pp 1-18 (2018)

Abstract Background Numerous scaffold-level sequences for wheat are now being released and, in this context, we report on a strategy for improving the overall assembly to a level comparable to that of the human genome. Results Using chromosome 7A of

Externí odkaz: https://doaj.org/article/0c850329a2e2415bae69d4ee3f8e54df

SAI: Fast and automated quantification of stomatal parameters on microscope images

Autor: Na Sai, James Paul Bockman, Hao Chen, Nathan Watson-Haigh, Bo Xu, Xueying Feng, Adriane Piechatzek, Chunhua Shen, Matthew Gilliham

Using microscopy to investigate stomatal behaviour is a common technique in plant physiology research. Manual inspection and measurement of stomatal features is a low throughput process in terms of time and human effort, which relies on expert knowle

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::5502f2e62b72158a521c926dae8e4ce1
https://doi.org/10.1101/2022.02.07.479482

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Autor: Schneider, Maria Victoria¹ (AUTHOR) mvschneiderg@gmail.com, Griffin, Philippa C² (AUTHOR), Tyagi, Sonika³ (AUTHOR), Flannery, Madison² (AUTHOR), Dayalan, Saravanan⁴ (AUTHOR), Gladman, Simon² (AUTHOR), Watson-Haigh, Nathan⁵ (AUTHOR), Bayer, Philipp E⁶ (AUTHOR), Charleston, Michael⁷ (AUTHOR), Cooke, Ira⁸ (AUTHOR), Cook, Rob⁹ (AUTHOR), Edwards, Richard J⁹ (AUTHOR), Edwards, David¹⁰ (AUTHOR), Gorse, Dominique¹¹ (AUTHOR), McConville, Malcolm¹² (AUTHOR), Powell, David¹³ (AUTHOR), Wilkins, Marc R¹⁴ (AUTHOR), Lonie, Andrew¹⁵ (AUTHOR)

Publikováno v: Briefings in Bioinformatics. Mar2019, Vol. 20 Issue 2, p384-389. 6p.

A targeted bioinformatics approach identifies highly variable cell surface proteins that are unique to Glomeromycotina.

Autor: Schultz, Carolyn J., Wu, Yue, Baumann, Ute

Publikováno v: Mycorrhiza; Jan2022, Vol. 32 Issue 1, p45-66, 22p