The Ruminant Telomere-to-Telomere (RT2T) Consortium.

Autor: Kalbfleisch TS; Department of Veterinary Science, University of Kentucky, Lexington, KY, USA., McKay SD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Murdoch BM; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Adelson DL; School of Biological Sciences, the University of Adelaide, North Terrace, Adelaide, South Australia, Australia., Almansa-Villa D; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Becker G; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Beckett LM; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Benítez-Galeano MJ; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Biase F; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Casey T; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Chuong E; BioFrontiers Institute, Department of Molecular Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA., Clark E; The Roslin Institute, University of Edinburgh, Edinburgh, UK., Clarke S; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Cockett N; Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT, USA., Couldrey C; Livestock Improvement Corporation, Hamilton, New Zealand., Davis BW; Department of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Elsik CG; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Faraut T; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Gao Y; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Genet C; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Grady P; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Green J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Green R; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Guan D; Department of Animal Science, University of California, Davis, Davis, CA, USA., Hagen D; Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Heaton M; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Huang W; Department of Animal Science, Michigan State University, East Lansing, MI, USA., Jarvis E; Vertebrate Genome Laboratory, the Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Kalleberg J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Khatib H; Department of Animal and Dairy Sciences, the University of Wisconsin-Madison, Madison, WI, USA., Koepfi KP; Smithsonian-Mason School of Conservation, George Mason University, Front Royal, VA, USA.; Center for Species Survival, Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA, USA., Koltes J; Department of Animal Science, Iowa State University, Ames, IA, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kuehn C; Friedrich-Loeffler-Institute (German Federal Research Institute for Animal Health), Greifswald-Insel Riems, Germany., Leeb T; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Leonard A; Animal Genomics, ETH Zürich, Zurich, Switzerland., Liu GE; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Low WY; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., McConnell H; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., McRae K; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Miga K; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.; Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA, USA., Mousel M; Animal Disease Research Unit, USDA ARS, Pullman, WA, USA.; School for Global Animal Health, Washington State University, Pullman, WA, USA., Neibergs H; Department of Animal Science, Washington State University, Pullman, WA, USA., Olagunju T; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Petry B; Department of Animal Science, Iowa State University, Ames, IA, USA., Pewsner M; Institute of Fish and Wildlife Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pickett BD; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pineda P; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA., Rachagani S; Veterinary Medicine and Surgery, NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rijnkels M; Department of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Robic A; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Rodriguez Osorio N; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Safonova Y; Computer Science and Engineering Department, Huck Institutes of the Life Sciences, Pennsylvania State University, State College, PA, USA., Schettini G; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Schnabel RD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Sirpu Natesh N; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO, USA., Stegemiller M; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Storer J; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Stothard P; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada., Stull C; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Tosser-Klopp G; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Traglia GM; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Tuggle CK; Department of Animal Science, Iowa State University, Ames, IA, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Watson C; Department of Biochemistry and Molecular Genetics, University of Louisville, Louisville, KY, USA., Weikard R; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Wimmers K; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Xie S; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Yang L; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Smith TPL; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA. tim.smith2@usda.gov., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu., Rosen BD; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA. ben.rosen@usda.gov.

Publikováno v: Nature genetics [Nat Genet] 2024 Aug; Vol. 56 (8), pp. 1566-1573. Date of Electronic Publication: 2024 Aug 05.

Red Cabbage Juice-Mediated Gut Microbiota Modulation Improves Intestinal Epithelial Homeostasis and Ameliorates Colitis.

Autor: Jean Wilson E; Department of Biological Systems Engineering, University of Nebraska-Lincoln, Lincoln, NE 68583, USA., Sirpu Natesh N; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO 65201, USA.; Roy Blunt NextGen Precision Health Institute, University of Missouri, Columbia, MO 65211, USA., Ghadermazi P; Department of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO 80523, USA., Pothuraju R; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE 68198, USA., Prajapati DR; Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198, USA., Pandey S; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198, USA., Kaifi JT; Department of Surgery, School of Medicine, University of Missouri, Columbia, MO 65211, USA., Dodam JR; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO 65201, USA., Bryan JN; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO 65201, USA., Lorson CL; Department of Veterinary Pathobiology, University of Missouri, Columbia, MO 65211, USA., Watrelot AA; Department of Food Science and Human Nutrition, Iowa State University, Ames, IA 50011, USA., Foster JM; Department of Surgery, Division of Surgical Oncology, University of Nebraska Medical Center, Omaha, NE 68198, USA., Mansell TJ; Department of Chemical and Biological Engineering, Iowa State University, Ames, IA 50011, USA., Joshua Chan SH; Department of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO 80523, USA., Batra SK; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE 68198, USA., Subbiah J; Department of Food Science, University of Arkansas, Fayetteville, AR 72701, USA., Rachagani S; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO 65201, USA.; Roy Blunt NextGen Precision Health Institute, University of Missouri, Columbia, MO 65211, USA.

Publikováno v: International journal of molecular sciences [Int J Mol Sci] 2023 Dec 30; Vol. 25 (1). Date of Electronic Publication: 2023 Dec 30.

Gut microbiota: a non-target victim of pesticide-induced toxicity.

Autor: Sharma T; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA., Sirpu Natesh N; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA.; Department of Veterinary Medicine & Surgery, University of Missouri, Columbia, MO, USA.; Roy Blunt NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA., Pothuraju R; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA., Batra SK; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA.; Fred & Pamela Buffett Cancer Center, Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE, USA., Rachagani S; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA.; Department of Veterinary Medicine & Surgery, University of Missouri, Columbia, MO, USA.; Roy Blunt NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA.

Publikováno v: Gut microbes [Gut Microbes] 2023 Jan-Dec; Vol. 15 (1), pp. 2187578.

Blocking CCL8-CCR8-Mediated Early Allograft Inflammation Improves Kidney Transplant Function.

Autor: Dangi A; Division of Nephrology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina., Husain I; Division of Nephrology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina., Jordan CZ; Division of Nephrology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina., Yu S; Division of Organ Transplantation, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China., Natesh N; Department of Biomedical Engineering, Duke University Pratt School of Engineering, Durham, North Carolina., Shen X; Department of Biomedical Engineering, Duke University Pratt School of Engineering, Durham, North Carolina.; Terasaki Institute, Los Angeles, California., Kwun J; Department of Surgery, Duke University School of Medicine, Durham, North Carolina.; Duke Transplant Center, Duke University School of Medicine, Durham, North Carolina., Luo X; Division of Nephrology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina.; Duke Transplant Center, Duke University School of Medicine, Durham, North Carolina.

Publikováno v: Journal of the American Society of Nephrology : JASN [J Am Soc Nephrol] 2022 Oct; Vol. 33 (10), pp. 1876-1890. Date of Electronic Publication: 2022 Aug 16.

Rapid tissue prototyping with micro-organospheres.

Autor: Wang Z; Woo Center for Big Data and Precision Health, Pratt School of Engineering, Duke University, Durham, NC, USA., Boretto M; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Millen R; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Natesh N; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA., Reckzeh ES; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Hsu C; College of Arts and Sciences, University of Chapel Hill, Chapel Hill, NC, USA., Negrete M; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA., Yao H; Biology Department, Trinity School of Arts and Sciences, Duke University, Durham, NC, USA., Quayle W; Xilis, Inc., Durham, NC, USA., Heaton BE; Department of Molecular Genetics and Microbiology, School of Medicine, Duke University, Durham, NC, USA., Harding AT; Department of Molecular Genetics and Microbiology, School of Medicine, Duke University, Durham, NC, USA., Bose S; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA., Driehuis E; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Beumer J; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Rivera GO; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA., van Ineveld RL; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 Utrecht, the Netherlands; Cancer Genomics Netherlands, Oncode Institute, 3584 Utrecht, the Netherlands., Gex D; Xilis, Inc., Durham, NC, USA., DeVilla J; Xilis, Inc., Durham, NC, USA., Wang D; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Puschhof J; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands; Microbiome and Cancer Division, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany., Geurts MH; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands., Yeung A; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA., Hamele C; Department of Molecular Genetics and Microbiology, School of Medicine, Duke University, Durham, NC, USA., Smith A; Xilis, Inc., Durham, NC, USA., Bankaitis E; Xilis, Inc., Durham, NC, USA., Xiang K; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA., Ding S; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA; Xilis, Inc., Durham, NC, USA., Nelson D; Xilis, Inc., Durham, NC, USA., Delubac D; Xilis, Inc., Durham, NC, USA., Rios A; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 Utrecht, the Netherlands., Abi-Hachem R; Department of Head and Neck Surgery and Communication Sciences, School of Medicine, Duke University, Durham, NC, USA., Jang D; Department of Head and Neck Surgery and Communication Sciences, School of Medicine, Duke University, Durham, NC, USA., Goldstein BJ; Department of Head and Neck Surgery and Communication Sciences, School of Medicine, Duke University, Durham, NC, USA., Glass C; Department of Pathology, School of Medicine, Duke University, Durham, NC, USA., Heaton NS; Department of Molecular Genetics and Microbiology, School of Medicine, Duke University, Durham, NC, USA., Hsu D; Division of Medical Oncology, Duke Cancer Institute, Duke University, Durham, NC, USA. Electronic address: shiaowen.hsu@duke.edu., Clevers H; Oncode, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands; Princess Máxima Center for Pediatric Oncology, Heidelberglaan 25, 3584 Utrecht, the Netherlands. Electronic address: h.clevers@hubrecht.eu., Shen X; Woo Center for Big Data and Precision Health, Pratt School of Engineering, Duke University, Durham, NC, USA; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, USA; Terasaki Institute, Los Angeles, CA, USA. Electronic address: xiling.shen@terasaki.org.

Publikováno v: Stem cell reports [Stem Cell Reports] 2022 Sep 13; Vol. 17 (9), pp. 1959-1975. Date of Electronic Publication: 2022 Aug 18.