Zobrazeno 1 - 10
of 461
pro vyhledávání: '"Natalia N Ivanova"'
Autor:
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T. B. K. Reddy, Sara Calhoun, Richard D. Hayes, Robin R. Rohwer, Zhichao Zhou, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Nigel J. Mouncey, Tijana Glavina del Rio, Igor V. Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D. McMahon, Tanja Woyke, Emiley A. Eloe-Fadrosh
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-7 (2024)
Abstract The North Temperate Lakes Long-Term Ecological Research (NTL-LTER) program has been extensively used to improve understanding of how aquatic ecosystems respond to environmental stressors, climate fluctuations, and human activities. Here, we
Externí odkaz:
https://doaj.org/article/eedd08c620c9493ebd2d5a49aa266009
Autor:
I-Min A Chen, Victor M Markowitz, Ken Chu, Iain Anderson, Konstantinos Mavromatis, Nikos C Kyrpides, Natalia N Ivanova
Publikováno v:
PLoS ONE, Vol 8, Iss 2, p e54859 (2013)
Effective comparative analysis of microbial genomes requires a consistent and complete view of biological data. Consistency regards the biological coherence of annotations, while completeness regards the extent and coverage of functional characteriza
Externí odkaz:
https://doaj.org/article/04f77dd709824ada9d00d4faf5a0d204
Autor:
Victor M Markowitz, I-Min A Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Biju Jacob, Anna Ratner, Konstantinos Liolios, Ioanna Pagani, Marcel Huntemann, Konstantinos Mavromatis, Natalia N Ivanova, Nikos C Kyrpides
Publikováno v:
PLoS ONE, Vol 7, Iss 7, p e40151 (2012)
The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from t
Externí odkaz:
https://doaj.org/article/6549e4fc21ec47758580f9ca7e3ce8de
Autor:
Garret Suen, Paul J Weimer, David M Stevenson, Frank O Aylward, Julie Boyum, Jan Deneke, Colleen Drinkwater, Natalia N Ivanova, Natalia Mikhailova, Olga Chertkov, Lynne A Goodwin, Cameron R Currie, David Mead, Phillip J Brumm
Publikováno v:
PLoS ONE, Vol 6, Iss 4, p e18814 (2011)
Fibrobacter succinogenes is an important member of the rumen microbial community that converts plant biomass into nutrients usable by its host. This bacterium, which is also one of only two cultivated species in its phylum, is an efficient and prolif
Externí odkaz:
https://doaj.org/article/14a5ec0919d84973a80ed1cad43d5998
Autor:
Athanasios Lykidis, Danilo Pérez-Pantoja, Thomas Ledger, Kostantinos Mavromatis, Iain J Anderson, Natalia N Ivanova, Sean D Hooper, Alla Lapidus, Susan Lucas, Bernardo González, Nikos C Kyrpides
Publikováno v:
PLoS ONE, Vol 5, Iss 3, p e9729 (2010)
BackgroundCupriavidus necator JMP134 is a Gram-negative beta-proteobacterium able to grow on a variety of aromatic and chloroaromatic compounds as its sole carbon and energy source.Methodology/principal findingsIts genome consists of four replicons (
Externí odkaz:
https://doaj.org/article/0dad813d0d644d2eb50401698a2e07f7
Autor:
Salma Mukhtar, Ann M. Hirsch, Noor Khan, Kauser A. Malik, Ethan A. Humm, Matteo Pellegrini, Baochen Shi, Leah Briscoe, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T.B.K. Reddy, Chris Daum, Alex Copeland, Natalia N. Ivanova, Nikos C. Kyrpides, Nicole Shapiro, Emiley A. Eloe-Fadrosh, Maskit Maymon, Muhammad S. Mirza, Samina Mehnaz
Publikováno v:
Phytobiomes Journal, Vol 4, Iss 4, Pp 364-374 (2020)
Cowpea is one of the major legumes cultivated in arid and semiarid regions of the world. Four soil-microbial samples (SS-1 through SS-4) collected from semiarid soils in Punjab, Pakistan were planted with cowpea (Vigna unguiculata) crops, which were
Externí odkaz:
https://doaj.org/article/cc1e5d38a4654643a4fa30ea7e52e4ea
Autor:
David Paez-Espino, Jinglie Zhou, Simon Roux, Stephen Nayfach, Georgios A. Pavlopoulos, Frederik Schulz, Katherine D. McMahon, David Walsh, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Susannah G. Tringe, Nikos C. Kyrpides
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-14 (2019)
Abstract Background Virophages are small viruses with double-stranded DNA genomes that replicate along with giant viruses and co-infect eukaryotic cells. Due to the paucity of virophage reference genomes, a collective understanding of the global viro
Externí odkaz:
https://doaj.org/article/07854e452d374477a94e846e0b667a88
Autor:
I-Min A Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan J Ritter, Cody Webb, Dongying Wu, Neha J Varghese, T B K Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Natalia N Ivanova
Publikováno v:
Nucleic Acids Res
Nucleic acids research, vol 51, iss D1
Nucleic acids research, vol 51, iss D1
The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img.jgi.doe.gov/m/) at the Department of Energy (DOE) Joint Genome Institute (JGI) continues to provide support for users to perform comparative analysis of isolate and single cell
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::21413184ecf928d2c02c9bf0fb021788
https://europepmc.org/articles/PMC9825475/
https://europepmc.org/articles/PMC9825475/
Autor:
Antonio Pedro Camargo, Stephen Nayfach, I-Min A Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan J Ritter, T B K Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y Neches, Tanja Woyke, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Simon Roux
Publikováno v:
Nucleic Acids Res
Nucleic acids research, vol 51, iss D1
Nucleic acids research, vol 51, iss D1
Viruses are widely recognized as critical members of all microbiomes. Metagenomics enables large-scale exploration of the global virosphere, progressively revealing the extensive genomic diversity of viruses on Earth and highlighting the myriad of wa
Autor:
Richard L. Hahnke, Jan P. Meier-Kolthoff, Marina García-López, Supratim Mukherjee, Marcel Huntemann, Natalia N. Ivanova, Tanja Woyke, Nikos C. Kyrpides, Hans-Peter Klenk, Markus Göker
Publikováno v:
Frontiers in Microbiology, Vol 7 (2016)
The bacterial phylum Bacteroidetes, characterized by a distinct gliding motility, occurs in a broad variety of ecosystems, habitats, life styles, and physiologies. Accordingly, taxonomic classification of the phylum, based on a limited number of feat
Externí odkaz:
https://doaj.org/article/6a943b6c0f7d48e88888a65ba6406c36