Zobrazeno 1 - 10
of 19
pro vyhledávání: '"Narges Bani Asadi"'
Autor:
Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Robert Sebra, Hagen Tilgner, Pegah T. Afshar, Kin Fai Au, Narges Bani Asadi, Mark B. Gerstein, Wing Hung Wong, Michael P. Snyder, Eric Schadt, Hugo Y. K. Lam
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-15 (2017)
RNA-seq is widely used for transcriptome analysis. Here, the authors analyse a wide spectrum of RNA-seq workflows and present a comprehensive analysis protocol named RNACocktail as well as a computational pipeline leveraging the widely used tools for
Externí odkaz:
https://doaj.org/article/0de7f1d5eb3f4b9daae33212abd18a28
Autor:
Narges Bani Asadi, Wing Hung Wong, Pegah Tootoonchi Afshar, Eric E. Schadt, Sayed Mohammad Ebrahim Sahraeian, Michael Snyder, Kin Fai Au, Hugo Y. K. Lam, Hagen Tilgner, Marghoob Mohiyuddin, Mark Gerstein, Robert Sebra
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-15 (2017)
Nature Communications
Nature Communications
RNA-sequencing (RNA-seq) is an essential technique for transcriptome studies, hundreds of analysis tools have been developed since it was debuted. Although recent efforts have attempted to assess the latest available tools, they have not evaluated th
Autor:
Carlos Bustamante, María C. Ávila-Arcos, Felice-Alessio Bava, Garry P. Nolan, Xuhuai Ji, Lam Hyk, Emery Smith, Chen Sc, Sanchita Bhattacharya, Alexandra Sockell, Atul J. Butte, Ralph S. Lachman, Matthew J. Kan, Narges Bani Asadi, Li J
Publikováno v:
Genome research, vol 28, iss 4
Over a decade ago, the Atacama humanoid skeleton (Ata) was discovered in the Atacama region of Chile. The Ata specimen carried a strange phenotype—6-in stature, fewer than expected ribs, elongated cranium, and accelerated bone age—leading to spec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2206a2763afee9c824779b928c4f7cac
https://escholarship.org/uc/item/7cc8133r
https://escholarship.org/uc/item/7cc8133r
Autor:
Marghoob Mohiyuddin, Wing Hung Wong, Jian Li, John C. Mu, Alexej Abyzov, Hugo Y. K. Lam, Narges Bani Asadi, Mark Gerstein
Publikováno v:
Bioinformatics
Summary: Structural variations (SVs) are large genomic rearrangements that vary significantly in size, making them challenging to detect with the relatively short reads from next-generation sequencing (NGS). Different SV detection methods have been d
Autor:
Michael D. Linderman, Robert V. Bruggner, Garry P. Nolan, Teresa H. Meng, Narges Bani Asadi, Vivek R. Athalye
Publikováno v:
ICS
Aberrant intracellular signaling plays an important role in many diseases. The causal structure of signal transduction networks can be modeled as Bayesian Networks (BNs), and computationally learned from experimental data. However, learning the struc
Autor:
Bayo Lau, John C. Mu, Marghoob Mohiyuddin, Narges Bani Asadi, Carolina Dallett, Li Tai Fang, Hugo Y. K. Lam
Publikováno v:
Bioinformatics
Summary: LongISLND is a software package designed to simulate sequencing data according to the characteristics of third generation, single-molecule sequencing technologies. The general software architecture is easily extendable, as demonstrated by th
Autor:
Thomas Quertermous, Wing Hung Wong, Narges Bani Asadi, Carlos Iribarren, Li Ma, Themistocles L. Assimes
Publikováno v:
Genetic Epidemiology. 34:434-443
Due to the complex nature of common diseases, their etiology is likely to involve "uncommon but strong" (UBS) interactive effects--i.e. allelic combinations that are each present in only a small fraction of the patients but associated with high disea
Autor:
Wing Hung Wong, Christopher DeJonge, Narges Bani Asadi, Nancy L. Bossert, Renee A. Reijo Pera, Mylene W.M. Yao, Jean Yee Hwa Yang, Meri T. Firpo, Wong Connie C
Publikováno v:
Differentiation. 78:18-23
Human embryonic stem cell (hESC) lines are derived from the inner cell mass (ICM) of preimplantation human blastocysts obtained on days 5-6 following fertilization. Based on their derivation, they were once thought to be the equivalent of the ICM. Re
Autor:
Wing Hung Wong, Narges Bani Asadi, Mark Gerstein, Xi Chen, Marghoob Mohiyuddin, John C. Mu, Hugo Y. K. Lam, Pegah Tootoonchi Afshar, Jian Li
Publikováno v:
Scientific Reports
A high-confidence, comprehensive human variant set is critical in assessing accuracy of sequencing algorithms, which are crucial in precision medicine based on high-throughput sequencing. Although recent works have attempted to provide such a resourc
Autor:
Narges Bani Asadi, Marghoob Mohiyuddin, John C. Mu, Daniel C. Koboldt, Greg Gibeling, Aparna Chhibber, Yu Fan, Mark Gerstein, Li Tai Fang, Wing Hung Wong, Wenyi Wang, Pegah Tootoonchi Afshar, Sharon Y. Barr, Hugo Y. K. Lam
Publikováno v:
Genome Biology
SomaticSeq is an accurate somatic mutation detection pipeline implementing a stochastic boosting algorithm to produce highly accurate somatic mutation calls for both single nucleotide variants and small insertions and deletions. The workflow currentl