Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus

Autor: Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros, Blake Sweeney, Peter F. Stadler, Anton I. Petrov, Michael Niepmann, Manja Marz

Publikováno v: Scientific Reports, Vol 14, Iss 1, Pp 1-12 (2024)

Abstract Hepatitis C virus (HCV) is a plus-stranded RNA virus that often chronically infects liver hepatocytes and causes liver cirrhosis and cancer. These viruses replicate their genomes employing error-prone replicases. Thereby, they routinely gene

Externí odkaz: https://doaj.org/article/60cac77d8c7c49d1b81ee5d4959f6b3e

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

Autor: Denise Kühnert, Vincent Navratil, Roman Martin, Marius Welzel, Franziska Hufsky, Guillermo Rangel-Pineros, Marie Hoffmann, Julian Matschinske, Robert D. Finn, Manja Marz, Hannah F. Löchel, Georges Hattab, Jan Baumbach, Stefan Hoops, Alice C. McHardy, Pedro Mendes, Kevin Lamkiewicz, Niko Beerenwinkel, Ioanna Kalvari, Joshua B Singer, Maria Jesus Martin, David Robertson, Jaina Mistry, Alexandre Almeida, Chris Upton, Markus List, Sara Chuguransky, Cecilia N. Arighi, Oliver Drechsel, Nicole Redaschi, Dominik Heider, Alex Bateman, Lorna Richardson, Christian Brandt, Pieter Libin, Adrian Fritz, Anton I. Petrov, Lars Kaderali, Knut Reinert, Lowri Williams, Max von Kleist, Áine O'Toole, Abdel Aouacheria, Martin Hölzer, Nancy Ontiveros-Palacios, Susanne Reimering, Kristof Theys, Stephan Fuchs, Anne-Christin Hauschild, Sepideh Sadegh, Gorka Lasso, Marco Cacciabue, Eric P. Nawrocki, Alejandro Reyes, Renó Kmiecinski

Publikováno v: Briefings in Bioinformatics
Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa232⟩
Preprints
Briefings in bioinformatics
England
Hufsky, F, Lamkiewicz, K, Almeida, A, Aouacheria, A, Arighi, C, Bateman, A, Baumbach, J, Beerenwinkel, N, Brandt, C, Cacciabue, M, Chuguransky, S, Drechsel, O, Finn, R D, Fritz, A, Fuchs, S, Hattab, G, Hauschild, A-C, Heider, D, Hoffmann, M, Hölzer, M, Hoops, S, Kaderali, L, Kalvari, I, von Kleist, M, Kmiecinski, R, Kühnert, D, Lasso, G, Libin, P, List, M, Löchel, H F, Martin, M J, Martin, R, Matschinske, J, McHardy, A C, Mendes, P, Mistry, J, Navratil, V, Nawrocki, E P, O'Toole, A N, Ontiveros-Palacios, N, Petrov, A I, Rangel-Pineros, G, Redaschi, N, Reimering, S, Reinert, K, Reyes, A, Richardson, L, Robertson, D L, Sadegh, S, Singer, J B, Theys, K, Upton, C, Welzel, M, Williams, L & Marz, M 2021, ' Computational strategies to combat COVID-19 : useful tools to accelerate SARS-CoV-2 and coronavirus research ', Briefings in Bioinformatics, vol. 22, no. 2, pp. 642-663 . https://doi.org/10.1093/bib/bbaa232
Briefings in Bioinformatics, 22 (2)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Preprints.org
Briefings in Bioinformatics, 2020, ⟨10.1093/bib/bbaa232⟩

SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causesthe infectious disease COVID-19. The biology of coronaviruses has been studied for many years. However, bioinformaticstools des

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7cc1ebc9849708c6b19e128f12d7c8fc

Molecular basis of gene regulation by the THI-box riboswitch

Autor: Nancy, Ontiveros-Palacios, Angela M, Smith, Frank J, Grundy, Mario, Soberon, Tina M, Henkin, Juan, Miranda-Ríos

Publikováno v: Molecular microbiology. 67(4)

Riboswitches are genetic control elements located mainly within the 5' untranslated regions of messenger RNAs. These RNA elements undergo conformational changes that modulate gene expression upon binding of regulatory signals including vitamins, amin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::f78c062d426c9d80a1eabfecd9ee05a4
https://pubmed.ncbi.nlm.nih.gov/18179415