Development of a knowledge graph framework to ease and empower translational approaches in plant research: a use-case on grain legumes

Autor: Baptiste Imbert, Jonathan Kreplak, Raphaël-Gauthier Flores, Grégoire Aubert, Judith Burstin, Nadim Tayeh

Publikováno v: Frontiers in Artificial Intelligence, Vol 6 (2023)

While the continuing decline in genotyping and sequencing costs has largely benefited plant research, some key species for meeting the challenges of agriculture remain mostly understudied. As a result, heterogeneous datasets for different traits are

Externí odkaz: https://doaj.org/article/9bbde7a883d24c2ba9ef880dd66d8000

PeaMUST (Pea MultiStress Tolerance), a multidisciplinary French project uniting researchers, plant breeders, and the food industry

Autor: Judith Burstin, Komlan Avia, Estefania Carillo‐Perdomo, Christophe Lecomte, Sana Beji, Eric Hanocq, Gregoire Aubert, Nadim Tayeh, Anthony Klein, Valérie Geffroy, Christine Le Signor, Stéphanie Pflieger, Marion Dalmais, Aurore Desgroux, Clément Lavaud, Anne Quillévéré‐Hamard, Jonathan Kreplak, Isabelle Lejeune‐Hénaut, Virginie Bourion, Marie‐Laure Pilet‐Nayel, Magalie Leveugle, Xavier Pinochet, Richard Thompson, the PeaMUST Consortium

Publikováno v: Legume Science, Vol 3, Iss 3, Pp n/a-n/a (2021)

Abstract The French government has supported as part of its “Investments for the Future” program a 9‐year research project, PeaMUST, devoted to pea and to a lesser extent, faba bean improvement. Focusing on the main causes of yield irregularity

Externí odkaz: https://doaj.org/article/7cbfd1f884774d4e9f787bcd8dedb7ad

The giant diploid faba genome unlocks variation in a global protein crop

Autor: Murukarthick Jayakodi, Agnieszka A. Golicz, Jonathan Kreplak, Lavinia I. Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphaël Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W. Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O. Warsame, Alexander H. J. Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Doležel, Liisa U. Holm, Luc L. Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J. Snowdon, Nils Stein, Frederick L. Stoddard, Jens Stougaard, Nadim Tayeh, Ana M. Torres, Björn Usadel, Ingo Schubert, Donal Martin O’Sullivan, Alan H. Schulman, Stig Uggerhøj Andersen

Publikováno v: Jayakodi, M, Golicz, A A, Kreplak, J, Fechete, L I, Angra, D, Bednář, P, Bornhofen, E, Zhang, H, Boussageon, R, Kaur, S, Cheung, K, Čížková, J, Gundlach, H, Hallab, A, Imbert, B, Keeble-Gagnère, G, Koblížková, A, Kobrlová, L, Krejčí, P, Mouritzen, T W, Neumann, P, Nadzieja, M, Nielsen, L K, Novák, P, Orabi, J, Padmarasu, S, Robertson-Shersby-Harvie, T, Robledillo, L Á, Schiemann, A, Tanskanen, J, Törönen, P, Warsame, A O, Wittenberg, A H J, Himmelbach, A, Aubert, G, Courty, P-E, Doležel, J, Holm, L U, Janss, L L, Khazaei, H, Macas, J, Mascher, M, Smýkal, P, Snowdon, R J, Stein, N, Stoddard, F L, Stougaard, J, Tayeh, N, Torres, A M, Usadel, B, Schubert, I, O'Sullivan, D M, Schulman, A H & Andersen, S U 2023, ' The giant diploid faba genome unlocks variation in a global protein crop ', Nature, vol. 615, no. 7953, pp. 652-659 . https://doi.org/10.1038/s41586-023-05791-5
Nature 615(7953), 652-659 (2023). doi:10.1038/s41586-023-05791-5
Natureevents directory, 615(7953):652-659

Increasing the proportion of locally produced plant protein in currently meat-rich diets could substantially reduce greenhouse gas emissions and loss of biodiversity1. However, plant protein production is hampered by the lack of a cool-season legume

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86317860227337f9a4ae7cefe8dda0ff
https://pure.au.dk/portal/da/publications/the-giant-diploid-faba-genome-unlocks-variation-in-a-global-protein-crop(97e8d652-935b-4a73-b127-019025997e6d).html

The giant diploid faba genome unlocks variation in a global protein crop

Autor: Murukarthick Jayakodi, Agnieszka A. Golicz, Jonathan Kreplak, Lavinia I. Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphaël Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W. Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O. Warsame, Alexander H.J. Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Doležel, Liisa U. Holm, Luc L. Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J. Snowdon, Nils Stein, Frederick L. Stoddard, Nadim Tayeh, Ana M. Torres, Björn Usadel, Ingo Schubert, Donal Martin O’Sullivan, Alan H. Schulman, Stig Uggerhøj Andersen

Increasing the proportion of locally produced plant protein in currently meat-rich diets could substantially reduce greenhouse gas emission and loss of biodiversity. However, plant protein production is hampered by the lack of a cool-season legume eq

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::de60a9111ac4f63358a58eed9937fd24
https://doi.org/10.1101/2022.09.23.509015

Quel impact de la génomique végétale sur l’innovation variétale : l’exemple du projet PeaMUST. Le génome du pois: vers de nouvelles strategies de sélection

Autor: Judith Burstin, Nadim Tayeh, Klein, Anthony, Komlan Avia, Marie-Laure Pilet-Nayel, Virginie Bourion, Estefania Carrillo Perdomo, Christophe Lecomte, Grégoire Aubert, Jonathan Kreplak, Duborjal, H., Pichon, J. P., Leveugle, M., Marie-Christine Le Paslier, Herbommez, J. F., Declerck, P., Mathieu Floriot, Hanocq, E.

Publikováno v: Séance de Académie d’agriculture de France "Innovation en agriculture – réflexion sur le progrès"
Séance de Académie d’agriculture de France "Innovation en agriculture – réflexion sur le progrès", Sep 2020, Virtuel, France
HAL

International audience; L’avancée des technologies « nouvelle génération » de séquençage de l’ADN permettent une connaissance de plus en plus poussée des génomes et de leur expression. Ces connaissances permettent d’approcher plus fine

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d92e9a92bc6712d36fc640ad23406d02
https://hal.inrae.fr/hal-03177674