Study of specific nanoenvironments containing [alfa]-helices in all-[alfa] and ([alfa]+[beta])+([alfa]/[beta]) proteins

Autor: MAZONI, I., BORRO, L. C., JARDINE, J. G., YANO, I. H., SALIM, J. A., NESHICH, G.

Publikováno v: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA

Protein secondary structure elements (PSSEs) such as [alfa]-helices, [beta]-strands, and turns are the primary building blocks of the tertiary protein structure. Our primary interest here is to reveal the characteristics of the nanoenvironment formed

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3056::0f92018ae68f01cd710c64648c98ec16
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1093429

Amino acid sequence of thePhaseolus vulgaris var. 'Fogo na Serra' inhibitor and interactive surface modeling for the enzyme-inhibitor complex

Autor: Neshich G, Bloch C, de Mello Lv, L. Morhy, de Carvalho Pg, da Silva Mc

Publikováno v: Journal of Protein Chemistry. 15:591-598

A trypsin and chymotrypsin inhibitor from seeds of Phaseolus vulgaris var. "Fogo na Serra" (PFSI) was purified and its complete amino acid sequence was determined using Edman degradation methods. The inhibitor was found to belong to the Bowman-Birk f

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a85276f46f7427d775d073ffb153418a
https://doi.org/10.1007/bf01908541

Protein cutoff scanning: a comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins

Autor: SILVEIRA, C. H. da, PIRES, D. E. V., MINARDI, R., RIBEIRO, C., VELOSO, C. J. M., LOPES, J. C. D., MEIRA JÚNIOR, W., NESHICH, G., RAMOS, C. H. I., HABESCH, R., SANTORO, M. M.

Publikováno v: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA

In this study, we carried out a comparative analysis between two classical methodologies to prospect residue contacts in proteins: the traditional cutoff dependent (CD) approach and cutoff free Delaunay tessellation (DT). In addition, two alternative

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3056::10e55ca8c5b51ab2f7c97c3ec9e1b0c2
http://www.alice.cnptia.embrapa.br/alice/handle/doc/664411

Finding protein-protein interaction patterns by contact map matching

Autor: Melo, R. C., Ribeiro, C., Murray, C. S., Veloso, C. J. M., Carlos Silveira, Neshich, G., Meira Jr, W., Carceroni, R. L., Santoro, M. M.

Publikováno v: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
Scopus-Elsevier

We propose a novel method for defining patterns of contacts present in protein-protein complexes. A new use of the traditional contact maps (more frequently used for representation of the intra-chain contacts) is presented for analysis of inter-chain

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::c05364510df07edb6f2b75f8370719d2
http://www.alice.cnptia.embrapa.br/alice/handle/doc/969

The Star STING server: a multiplatform environment for protein structure analysis

Autor: Neshich, G., Mazoni, I., Oliveira, S. R. M., Yamagishi, M. E. B., Kuser-Falcao, P. R., Luiz Borro, Morita, D. U., Souza, K. R. R., Almeida, G. V., Rodrigues, D. N., Jardine, J. G., Togawa, R. C., Mancini, A. L., Higa, R. H., Cruz, S. A. B., Vieira, F. D., Santos, E. H., Melo, R. C., Santoro, M. M.

Publikováno v: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
Scopus-Elsevier
ResearcherID

Star STING is the latest version of the STING suite of programs and corresponding database. We report on five important aspects of this package that have acquired some new characteristics, designed to add key advantages to the whole suite: 1) availab

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::1def006f0b5e02e46f99788b9323cdad
http://www.alice.cnptia.embrapa.br/alice/handle/doc/9170