Zobrazeno 1 - 10
of 53
pro vyhledávání: '"NCBI Taxonomy"'
Autor:
Tetsu Sakamoto, J. Miguel Ortega
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-23 (2021)
Abstract Background NCBI Taxonomy is the main taxonomic source for several bioinformatics tools and databases since all organisms with sequence accessions deposited on INSDC are organized in its hierarchical structure. Despite the extensive use and a
Externí odkaz:
https://doaj.org/article/3791ae8f687146a7a63163f8535498b8
Autor:
Miranda-Escalada, Antonio, Farré-Maduell, Eulàlia, Lima-López, Salvador, Estrada, Darryl, Gascó, Luis, Krallinger, Martin
Publikováno v:
RUA. Repositorio Institucional de la Universidad de Alicante
Universidad de Alicante (UA)
Universidad de Alicante (UA)
There is a pressing need to generate tools for finding mentions of species, pathogens, or food from medical texts. To promote the development of such tools we organized the LivingNER task. LivingNER relied on a large Gold Standard corpus of 2000 care
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::699251d582ffc744f11ea44fa4762ebc
https://hdl.handle.net/10045/127432
https://hdl.handle.net/10045/127432
Autor:
J. Miguel Ortega, Tetsu Sakamoto
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-23 (2021)
BMC Bioinformatics
BMC Bioinformatics
Background NCBI Taxonomy is the main taxonomic source for several bioinformatics tools and databases since all organisms with sequence accessions deposited on INSDC are organized in its hierarchical structure. Despite the extensive use and applicatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::275e058e7df27ff0cc3ea95c1295cc87
https://doaj.org/article/3791ae8f687146a7a63163f8535498b8
https://doaj.org/article/3791ae8f687146a7a63163f8535498b8
Conference
Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.
K zobrazení výsledku je třeba se přihlásit.
In microbiome analysis, one main approach is to align metagenomic sequencing reads against a protein-reference database such as NCBI-nr, and then to perform taxonomic and functional binning based on the alignments. This approach is embodied, for exam
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0f7569dfb47b2c2114097946d22a0760
https://doi.org/10.1101/2021.11.23.469797
https://doi.org/10.1101/2021.11.23.469797
Autor:
Randi Vita, Alessandro Sette, Lindy Edwards, Rebecca C. Jackson, Nina Blazeska, James A. Overton, Bjoern Peters
Publikováno v:
Database: The Journal of Biological Databases and Curation
The Immune Epitope Database (IEDB) freely provides experimental data regarding immune epitopes to the scientific public. The main users of the IEDB are immunologists who can easily use our web interface to search for peptidic epitopes via their simpl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e7be5d3e2e769e7ad9ecb96a3fd42e54
https://doi.org/10.1093/database/baab014
https://doi.org/10.1093/database/baab014
Autor:
Michael Burch, Denis Shehu, Tar van Krieken, Adrian Vramulet, Mara Miulescu, Mehrdad Farsadyar, Alina Vorobiova, Alex Thieme
Publikováno v:
VINCI
In this paper we present a web-based interactive tool for visualizing hierarchical data. Our main purpose is to facilitate the visualization of datasets. We achieve this by offering VizWick in a browser environment, with no requirement of additional
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::17d2f39e0eca761e8a9a52d911957982
https://doi.org/10.1145/3430036.3430044
https://doi.org/10.1145/3430036.3430044
Autor:
Shobha Sharma, Barbara Robbertse, Sivakumar Kannan, Seán Turner, Detlef D. Leipe, Vladimir Soussov, Richard McVeigh, Stacy Ciufo, Conrad L. Schoch, Rogneda Khovanskaya, Lu Sun, Carol L. Hotton, Mikhail Domrachev, Ilene Karsch-Mizrachi, John P. Sullivan, Kathleen O'Neill
Publikováno v:
Database (Oxford)
The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration. Since t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3fe53544b0ebf5ca8cf180d1008c5bed
https://europepmc.org/articles/PMC7408187/
https://europepmc.org/articles/PMC7408187/
Publikováno v:
Zootaxa. 4706(3)
We compared the species names in the Reptile Database, a dedicated taxonomy database, with those in the NCBI taxonomy database, which provides the taxonomic backbone for the GenBank sequence database. About 67% of the known ~11,000 reptile species ar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c2b04b403714645ffb97c5dfe99cb339
https://pubmed.ncbi.nlm.nih.gov/32230528
https://pubmed.ncbi.nlm.nih.gov/32230528
Akademický článek
Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.
K zobrazení výsledku je třeba se přihlásit.