Zobrazeno 1 - 10
of 16
pro vyhledávání: '"N. S. Coll"'
Autor:
R. de Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)
Abstract Background Ralstonia solanacearum is the causal agent of bacterial wilt, a devastating plant disease responsible for serious economic losses especially on potato, tomato, and other solanaceous plant species in temperate countries. In R. sola
Externí odkaz:
https://doaj.org/article/afe0f4f29b7c4bc895faef8f2ede7da7
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 5: Transcriptomic profile of R. solanacearum in in planta genetic programmes. Up-regulated (left) and down-regulated (right) genes shared and unique across the three in planta conditions. Each vertical bar plot represents the number o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b60dd0a7b03bcf3942d7e5a7b2154f2f
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 4: Overlap of DEGs in apoplast, early and late xylem compared to previous gene expression analysis. (A) Percentage of common DE genes in each in planta condition (versus rich medium) compared to previous in planta gene expression anal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::68366ff5937a83cfb9bf8a48e94054d1
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 2: RNAseq experimental set-up and bioinformatic pipeline. (A) Experimental set-up for the three in planta conditions, corresponding to an early (leaf apoplast), mid (xylem from asymptomatic plants) and late stages (xylem from dead pla
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::442cae17e6d4d7141a6f979892a98f16
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 8: Gene expression dynamics of R. solanacearum throughout infection. Six clusters were obtained through Mfuzz clustering of log2- fold-change data of the apoplast, early and late xylem conditions normalised to the reference rich liqui
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::583d56b1ca0750cdb50d2333de822614
Autor:
Y.-F. Zhang, C. M. Bitz, J. L. Anderson, N. S. Collins, T. J. Hoar, K. D. Raeder, E. Blanchard-Wrigglesworth
Publikováno v:
The Cryosphere, Vol 15, Pp 1277-1284 (2021)
Uncertain or inaccurate parameters in sea ice models influence seasonal predictions and climate change projections in terms of both mean and trend. We explore the feasibility and benefits of applying an ensemble Kalman filter (EnKF) to estimate param
Externí odkaz:
https://doaj.org/article/653a926d6da64657af362495245bd5af
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 11: Phytohormones biosynthesis gene expression profile. Heatmap showing the normalised transcripts per million (TPM) of the genes involved in phytohormones biosynthesis in the reference and in the in planta conditions.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::de94e9e71e864489368cc5f8edb5e7dc
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 9: T3SS regulatory cascade and apparatus gene expression profile. Heatmap showing the normalised transcripts per million (TPM) of the genes involved in the T3SS regulatory cascade and the T3SS apparatus in the reference and in the in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::04028d657624809d73623554c9a42168
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 12: ROS scavenging enzymes gene expression profile. Heatmap showing the normalised transcripts per million (TPM) of the genes coding for ROS scavenging enzymes in the reference condition and in planta apoplast, early and late conditio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c751aab08673934b4f9e5654ed98d5cf
Autor:
R. De Pedro-Jové, M. Puigvert, P. Sebastià, A. P. Macho, J. S. Monteiro, N. S. Coll, J. C. Setúbal, M. Valls
Additional file 1: R. solanacearum reporter strains and bacterial growth show equivalent infection rates. (A) Luminescence levels or bacterial growth (bar plot) and symptom development (line plot) in potato plants were monitored over time to detect t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::18bbfba416e3f6444331844f56c5ac8b