Development of an amplicon-based sequencing approach in response to the global emergence of mpox.

Autor: Nicholas F G Chen, Chrispin Chaguza, Luc Gagne, Matthew Doucette, Sandra Smole, Erika Buzby, Joshua Hall, Stephanie Ash, Rachel Harrington, Seana Cofsky, Selina Clancy, Curtis J Kapsak, Joel Sevinsky, Kevin Libuit, Daniel J Park, Peera Hemarajata, Jacob M Garrigues, Nicole M Green, Sean Sierra-Patev, Kristin Carpenter-Azevedo, Richard C Huard, Claire Pearson, Kutluhan Incekara, Christina Nishimura, Jian Ping Huang, Emily Gagnon, Ethan Reever, Jafar Razeq, Anthony Muyombwe, Vítor Borges, Rita Ferreira, Daniel Sobral, Silvia Duarte, Daniela Santos, Luís Vieira, João Paulo Gomes, Carly Aquino, Isabella M Savino, Karinda Felton, Moneeb Bajwa, Nyjil Hayward, Holly Miller, Allison Naumann, Ria Allman, Neel Greer, Amary Fall, Heba H Mostafa, Martin P McHugh, Daniel M Maloney, Rebecca Dewar, Juliet Kenicer, Abby Parker, Katharine Mathers, Jonathan Wild, Seb Cotton, Kate E Templeton, George Churchwell, Philip A Lee, Maria Pedrosa, Brenna McGruder, Sarah Schmedes, Matthew R Plumb, Xiong Wang, Regina Bones Barcellos, Fernanda M S Godinho, Richard Steiner Salvato, Aimee Ceniseros, Mallery I Breban, Nathan D Grubaugh, Glen R Gallagher, Chantal B F Vogels

Publikováno v: PLoS Biology, Vol 21, Iss 6, p e3002151 (2023)

The 2022 multicountry mpox outbreak concurrent with the ongoing Coronavirus Disease 2019 (COVID-19) pandemic further highlighted the need for genomic surveillance and rapid pathogen whole-genome sequencing. While metagenomic sequencing approaches hav

Externí odkaz: https://doaj.org/article/f6624948d6784e6da2c1bd198855dab0

Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA

Autor: Altajar, Ahmad, DeJesus, Alexandra, Brito, Anderson, Watkins, Anne E., Muyombwe, Anthony, Blumenstiel, Brendan S., Neal, Caleb, Kalinich, Chaney C., Liu, Chen, Loreth, Christine, Castaldi, Christopher, Pearson, Claire, Bernard, Clare, Nolet, Corey M., Ferguson, David, Buzby, Erika, Laszlo, Eva, Reagan, Faye L., Vicente, Gina, Rooke, Heather M., Munger, Heidi, Johnson, Hillary, Tikhonova, Irina R., Ott, Isabel M., Razeq, Jafar, Meldrim, James C., Brown, Jessica, Wang, Jianhui, Vostok, Johanna, Beauchamp, John P., Grimsby, Jonna L., Hall, Joshua, Messer, Katelyn S., Larkin, Katie L., Vernest, Kyle, Madoff, Lawrence C., Green, Lisa M., Webber, Lori, Gagne, Luc, Ulcena, Maesha A., Ray, Marianne C., Fisher, Marissa E., Barter, Mary, Lee, Matthew D., DeFelice, Matthew T., Cipicchio, Michelle C., Smith, Natasha L., Lennon, Niall J., Fitzgerald, Nicholas A., Kerantzas, Nicholas, Hui, Pei, Harrington, Rachel, Downing, Randy, Haye, Rashida, Lynch, Ryan, Anderson, Scott E., Hennigan, Scott, English, Sean, Cofsky, Seana, Clancy, Selina, Mane, Shrikant, Ash, Stephanie, Baez, Stephanie, Fleming, Steve, Murphy, Steven, Chaluvadi, Sushma, Alpert, Tara, Rivard, Trevor, Schulz, Wade, Mandese, Zoe M., Earnest, Rebecca, Uddin, Rockib, Matluk, Nicholas, Renzette, Nicholas, Turbett, Sarah E., Siddle, Katherine J., Adams, Gordon, Tomkins-Tinch, Christopher H., Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Koch, Robert Tobias, Billig, Kendall, Fauver, Joseph R., Vogels, Chantal B.F., Bilguvar, Kaya, De Kumar, Bony, Landry, Marie L., Peaper, David R., Kelly, Kevin, Omerza, Greg, Grieser, Heather, Meak, Sim, Martha, John, Dewey, Hannah B., Kales, Susan, Berenzy, Daniel, Carpenter-Azevedo, Kristin, King, Ewa, Huard, Richard C., Novitsky, Vlad, Howison, Mark, Darpolor, Josephine, Manne, Akarsh, Kantor, Rami, Smole, Sandra C., Brown, Catherine M., Fink, Timelia, Lang, Andrew S., Gallagher, Glen R., Pitzer, Virginia E., Sabeti, Pardis C., Gabriel, Stacey, MacInnis, Bronwyn L., Tewhey, Ryan, Adams, Mark D., Park, Daniel J., Lemieux, Jacob E., Grubaugh, Nathan D.

Publikováno v: In Cell Reports Medicine 19 April 2022 3(4)

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.

Autor: Chantal B F Vogels, Mallery I Breban, Isabel M Ott, Tara Alpert, Mary E Petrone, Anne E Watkins, Chaney C Kalinich, Rebecca Earnest, Jessica E Rothman, Jaqueline Goes de Jesus, Ingra Morales Claro, Giulia Magalhães Ferreira, Myuki A E Crispim, Brazil-UK CADDE Genomic Network, Lavanya Singh, Houriiyah Tegally, Ugochukwu J Anyaneji, Network for Genomic Surveillance in South Africa, Emma B Hodcroft, Christopher E Mason, Gaurav Khullar, Jessica Metti, Joel T Dudley, Matthew J MacKay, Megan Nash, Jianhui Wang, Chen Liu, Pei Hui, Steven Murphy, Caleb Neal, Eva Laszlo, Marie L Landry, Anthony Muyombwe, Randy Downing, Jafar Razeq, Tulio de Oliveira, Nuno R Faria, Ester C Sabino, Richard A Neher, Joseph R Fauver, Nathan D Grubaugh

Publikováno v: PLoS Biology, Vol 19, Iss 5, p e3001236 (2021)

With the emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) variants that may increase transmissibility and/or cause escape from immune responses, there is an urgent need for the targeted surveillance of circulating lineages. I

Externí odkaz: https://doaj.org/article/df6ae3b174fb4117b9adacb18f55fee4

Development of an amplicon-based sequencing approach in response to the global emergence of mpox

Autor: Chen, Nicholas F.G., Chaguza, Chrispin, Gagne, Luc, Doucette, Matthew, Smole, Sandra, Buzby, Erika, Hall, Joshua, Ash, Stephanie, Harrington, Rachel, Cofsky, Seana, Clancy, Selina, Kapsak, Curtis J., Sevinsky, Joel, Libuit, Kevin, Park, Daniel J., Hemarajata, Peera, Garrigues, Jacob M., Green, Nicole M., Sierra-Patev, Sean, Carpenter-Azevedo, Kristin, Huard, Richard C., Pearson, Claire, Incekara, Kutluhan, Nishimura, Christina, Huang, Jian Ping, Gagnon, Emily, Reever, Ethan, Razeq, Jafar, Muyombwe, Anthony, Borges, Vítor, Ferreira, Rita, Sobral, Daniel, Duarte, Silvia, Santos, Daniela, Vieira, Luís, Gomes, João Paulo, Aquino, Carly, Savino, Isabella M., Felton, Karinda, Bajwa, Moneeb, Hayward, Nyjil, Miller, Holly, Naumann, Allison, Allman, Ria, Greer, Neel, Fall, Amary, Mostafa, Heba H., McHugh, Martin P., Maloney, Daniel M., Dewar, Rebecca, Kenicer, Juliet, Parker, Abby, Mathers, Katharine, Wild, Jonathan, Cotton, Seb, Templeton, Kate E., Churchwell, George, Lee, Philip A., Pedrosa, Maria, McGruder, Brenna, Schmedes, Sarah, Plumb, Matthew R., Wang, Xiong, Barcellos, Regina Bones, Godinho, Fernanda M.S., Salvato, Richard Steiner, Ceniseros, Aimee, Breban, Mallery I., Grubaugh, Nathan D., Gallagher, Glen R., Vogels, Chantal B.F.

Publikováno v: Chen, N F G, Chaguza, C, Gagne, L, Doucette, M, Smole, S, Buzby, E, Hall, J, Ash, S, Harrington, R, Cofsky, S, Clancy, S, Kapsak, C J, Sevinsky, J, Libuit, K, Park, D J, Hemarajata, P, Garrigues, J M, Green, N M, Sierra-Patev, S, Carpenter-Azevedo, K, Huard, R C, Pearson, C, Incekara, K, Nishimura, C, Huang, J P, Gagnon, E, Reever, E, Razeq, J, Muyombwe, A, Borges, V, Ferreira, R, Sobral, D, Duarte, S, Santos, D, Vieira, L, Gomes, J P, Aquino, C, Savino, I M, Felton, K, Bajwa, M, Hayward, N, Miller, H, Naumann, A, Allman, R, Greer, N, Fall, A, Mostafa, H H, McHugh, M P, Maloney, D M, Dewar, R, Kenicer, J, Parker, A, Mathers, K, Wild, J, Cotton, S, Templeton, K E, Churchwell, G, Lee, P A, Pedrosa, M, McGruder, B, Schmedes, S, Plumb, M R, Wang, X, Barcellos, R B, Godinho, F M S, Salvato, R S, Ceniseros, A, Breban, M I, Grubaugh, N D, Gallagher, G R & Vogels, C B F 2023, ' Development of an amplicon-based sequencing approach in response to the global emergence of mpox ', PLoS Biology, vol. 21, no. 6, e3002151 . https://doi.org/10.1371/journal.pbio.3002151

The 2022 multicountry mpox outbreak concurrent with the ongoing Coronavirus Disease 2019 (COVID-19) pandemic further highlighted the need for genomic surveillance and rapid pathogen whole-genome sequencing. While metagenomic sequencing approaches hav

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3094::c70b2659e6875160cd2f54cb3d5fce45
https://hdl.handle.net/20.500.11820/1428b9db-cca0-412e-961e-9975315dd23f

Neutralizing antibodies against the SARS-CoV-2 Delta and Omicron variants following heterologous CoronaVac plus BNT162b2 booster vaccination

Autor: Eddy Pérez-Then, Carolina Lucas, Valter Silva Monteiro, Marija Miric, Vivian Brache, Leila Cochon, Chantal B. F. Vogels, Amyn A. Malik, Elena De la Cruz, Aidelis Jorge, Margarita De los Santos, Patricia Leon, Mallery I. Breban, Kendall Billig, Inci Yildirim, Claire Pearson, Randy Downing, Emily Gagnon, Anthony Muyombwe, Jafar Razeq, Melissa Campbell, Albert I. Ko, Saad B. Omer, Nathan D. Grubaugh, Sten H. Vermund, Akiko Iwasaki

Publikováno v: Nature Medicine. 28:481-485

The recent emergence of the SARS-CoV-2 Omicron variant is raising concerns because of its increased transmissibility and its numerous spike mutations, which have the potential to evade neutralizing antibodies elicited by COVID-19 vaccines. Here we ev

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dce593c37b6151d571afe5760d78ef5a
https://doi.org/10.1038/s41591-022-01705-6