Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Mustafa Tekpinar"'
Autor:
Dariusz Czernecki, Pierre Legrand, Mustafa Tekpinar, Sandrine Rosario, Pierre-Alexandre Kaminski, Marc Delarue
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-11 (2021)
The cyanophage S-2L incorporates 2-aminoadenine (Z) instead of adenine (A) in its genome. Here, the authors provide an explanation for the absence of A in S-2L genome by identifying and characterising functionally and structurally both the HD phospho
Externí odkaz:
https://doaj.org/article/abe6a0fc434445db8149e9dae08610a3
Autor:
Camille Samson, Pierre Legrand, Mustafa Tekpinar, Jef Rozenski, Mikhail Abramov, Philipp Holliger, Vitor B. Pinheiro, Piet Herdewijn, Marc Delarue
Publikováno v:
Biomolecules, Vol 10, Iss 12, p 1647 (2020)
Archaeal DNA polymerases from the B-family (polB) have found essential applications in biotechnology. In addition, some of their variants can accept a wide range of modified nucleotides or xenobiotic nucleotides, such as 1,5-anhydrohexitol nucleic ac
Externí odkaz:
https://doaj.org/article/b095ac31ee974895994ea5dcc61f0c3a
Autor:
Ahmet Yildirim, Mustafa Tekpinar
Publikováno v:
Journal of Chemical Information and Modeling. 63:9-19
Proteases are major drug targets for many viral diseases. However, mutations can render several antiprotease drugs inefficient rapidly even though these mutations may not alter protein structures significantly. Understanding relations between quickly
Autor:
Mustafa Tekpinar
Data for the "Building Quantitative Bridges between Dynamics and Sequences of SARS-CoV‑2 Main Protease and a Diverse Set of Thirty-Two Proteins" accepted in the Journal of Chemical Information and Modeling. 1 microsecond long molecular dynamics sim
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2813aa89a4852cc2b69d781e1dcef45d
Publikováno v:
Journal of Chemical Information and Modeling
Journal of Chemical Information and Modeling, 2021, 61 (10), pp.4832-4838. ⟨10.1021/acs.jcim.1c00742⟩
Journal of Chemical Information and Modeling, American Chemical Society, 2021, 61 (10), pp.4832-4838. ⟨10.1021/acs.jcim.1c00742⟩
Journal of Chemical Information and Modeling, 2021, 61 (10), pp.4832-4838. ⟨10.1021/acs.jcim.1c00742⟩
Journal of Chemical Information and Modeling, American Chemical Society, 2021, 61 (10), pp.4832-4838. ⟨10.1021/acs.jcim.1c00742⟩
Erratum in Correction to "Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus". Tekpinar M, Neron B, Delarue M. J Chem Inf Model. 2021 Nov 22;61(11):5720. doi: 10.1021/acs.jcim.1c
Publikováno v:
Journal of Physical Chemistry B, 125(36):02096, 10059-10071. AMER CHEMICAL SOC
The calcium-binding protein S100A4 plays an important role in a wide range of biological processes such as cell motility, invasion, angiogenesis, survival, differentiation, contractility, and tumor metastasis and interacts with a range of partners. T
Autor:
Ahmet Yildirim, Mustafa Tekpinar
Publikováno v:
Journal of Biomolecular Structure and Dynamics
Journal of Biomolecular Structure & Dynamics
article-version (VoR) Version of Record
Journal of Biomolecular Structure & Dynamics
article-version (VoR) Version of Record
SARS-CoV-2 main protease is one of the major targets in drug development efforts against Covid-19. Even though several structures were reported to date, its dynamics is not understood well. In particular, impact of dimerization and ligand binding on
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::beca4aff6b3b5f4624cb27c05c4b6fcb
Publikováno v:
Journal of chemical information and modeling. 61(10)
Extracting dynamical pairwise correlations and identifying key residues from large molecular dynamics trajectories or normal-mode analysis of coarse-grained models are important for explaining various processes like ligand binding, mutational effects
Publikováno v:
The journal of physical chemistry. B. 125(36)
The calcium-binding protein S100A4 plays an important role in a wide range of biological processes such as cell motility, invasion, angiogenesis, survival, differentiation, contractility, and tumor metastasis and interacts with a range of partners. T
Autor:
Ahmet Yildirim, Mustafa Tekpinar
Publikováno v:
Journal of Chemical Information and Modeling. 58:1947-1961
Identification of correlated residues in proteins is very important for many areas of protein research such as drug design, protein domain classification, signal transmission, allostery and mutational studies. Pairwise residue correlations in protein