High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409Twith an incomplete denitrification pathway

Autor: Zhou, EM, Murugapiran, SK, Mefferd, CC, Liu, L, Xian, WD, Yin, YR, Ming, H, Yu, TT, Huntemann, M, Clum, A, Pillay, M, Palaniappan, K, Varghese, N, Mikhailova, N, Stamatis, D, Reddy, TBK, Ngan, CY, Daum, C, Shapiro, N, Markowitz, V, Ivanova, N, Spunde, A, Kyrpides, N, Woyke, T, Li, WJ, Hedlund, BP

Publikováno v: Zhou, EM; Murugapiran, SK; Mefferd, CC; Liu, L; Xian, WD; Yin, YR; et al.(2016). High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409Twith an incomplete denitrification pathway. Standards in Genomic Sciences, 11(1). doi: 10.1186/s40793-016-0140-3. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/49c6b0bb

© 2016 Zhou et al. Thermus amyloliquefaciens type strain YIM 77409Tis a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we desc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::b37d74bdc3407ceebabc6564476edd40
http://www.escholarship.org/uc/item/49c6b0bb

Distribution and Genomic Variation of Thermophilic Cyanobacteria in Diverse Microbial Mats at the Upper Temperature Limits of Photosynthesis.

Autor: Kees ED; Department of Plant and Microbial Biology, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA., Murugapiran SK; Department of Plant and Microbial Biology, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA., Bennett AC; Department of Plant and Microbial Biology, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA., Hamilton TL; Department of Plant and Microbial Biology, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA.; Biotechnology Institute, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA.

Publikováno v: MSystems [mSystems] 2022 Oct 26; Vol. 7 (5), pp. e0031722. Date of Electronic Publication: 2022 Aug 18.

Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.

Autor: Thomas SC; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States., Payne D; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States., Tamadonfar KO; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States., Seymour CO; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States., Jiao JY; School of Life Sciences, Sun Yat-sen University, Guangzhou, China.; State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China., Murugapiran SK; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States.; Department of Plant and Microbial Biology, The BioTechnology Institute, University of Minnesota, St. Paul, MN, United States., Lai D; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States., Lau R; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Bowen BP; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Silva LP; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Louie KB; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Huntemann M; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Clum A; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Spunde A; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Pillay M; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Palaniappan K; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Varghese N; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Mikhailova N; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Chen IM; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Stamatis D; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Reddy TBK; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., O'Malley R; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Daum C; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Shapiro N; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Ivanova N; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Kyrpides NC; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Woyke T; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Eloe-Fadrosh E; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Hamilton TL; Department of Plant and Microbial Biology, The BioTechnology Institute, University of Minnesota, St. Paul, MN, United States., Dijkstra P; Department of Biological Sciences, Center of Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, United States., Dodsworth JA; Department of Biology, California State University, San Bernardino, CA, United States., Northen TR; The Department of Energy Joint Genome Institute, Berkeley, CA, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States., Li WJ; School of Life Sciences, Sun Yat-sen University, Guangzhou, China.; State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China., Hedlund BP; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States.; Nevada Institute of Personalized Medicine, University of Nevada, Las Vegas, Las Vegas, NV, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2021 May 03; Vol. 12, pp. 632731. Date of Electronic Publication: 2021 May 03 (Print Publication: 2021).

Diverse respiratory capacity among Thermus strains from US Great Basin hot springs.

Autor: Zhou EM; School of Resource Environment and Earth Science, Yunnan University, Kunming, 650091, People's Republic of China.; State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA., Adegboruwa AL; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA., Mefferd CC; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA., Bhute SS; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA., Murugapiran SK; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA., Dodsworth JA; Department of Biology, California State University, San Bernardino, CA, USA., Thomas SC; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA., Bengtson AJ; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA.; SWCA Environmental Consultants, Reno, NV, USA., Liu L; State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China., Xian WD; State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China., Li WJ; State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China. liwenjun3@mail.sysu.edu.cn., Hedlund BP; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA. brian.hedlund@unlv.edu.; Nevada Institute of Personalized Medicine, University of Nevada Las Vegas, Las Vegas, NV, USA. brian.hedlund@unlv.edu.

Publikováno v: Extremophiles : life under extreme conditions [Extremophiles] 2020 Jan; Vol. 24 (1), pp. 71-80. Date of Electronic Publication: 2019 Sep 18.

Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures.

Autor: Thomas SC; School of Life Sciences, University of Nevada, Las Vegas, NV, United States., Tamadonfar KO; School of Life Sciences, University of Nevada, Las Vegas, NV, United States., Seymour CO; School of Life Sciences, University of Nevada, Las Vegas, NV, United States., Lai D; School of Life Sciences, University of Nevada, Las Vegas, NV, United States., Dodsworth JA; Department of Biology, California State University, San Bernardino, CA, United States., Murugapiran SK; School of Life Sciences, University of Nevada, Las Vegas, NV, United States., Eloe-Fadrosh EA; Department of Energy Joint Genome Institute, Joint Genome Institute, Walnut Creek, CA, United States., Dijkstra P; Department of Biological Sciences, Center of Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, United States., Hedlund BP; School of Life Sciences, University of Nevada, Las Vegas, NV, United States.; Nevada Institute of Personalized Medicine, University of Nevada, Las Vegas, NV, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2019 Jul 05; Vol. 10, pp. 1427. Date of Electronic Publication: 2019 Jul 05 (Print Publication: 2019).