A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2.

Autor: Carbo EC; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Mourik K; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Boers SA; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Munnink BO; Department of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands., Nieuwenhuijse D; Department of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands., Jonges M; Department of Medical Microbiology and Infection Prevention, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands., Welkers MRA; Department of Medical Microbiology and Infection Prevention, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands., Matamoros S; Department of Medical Microbiology and Infection Prevention, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands., van Harinxma Thoe Slooten J; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Kraakman MEM; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Karelioti E; GenomeScan B.V, Leiden, The Netherlands., van der Meer D; GenomeScan B.V, Leiden, The Netherlands., Veldkamp KE; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Kroes ACM; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., Sidorov I; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands., de Vries JJC; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands. jjcdevries@lumc.nl.

Publikováno v: European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology [Eur J Clin Microbiol Infect Dis] 2023 Jun; Vol. 42 (6), pp. 701-713. Date of Electronic Publication: 2023 Apr 05.

Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains

Autor: Phan, MVT, Tue, NT, Pham, HA, Baker, S, Kellam, P, Cotten, M, Bach, TK, Berto, A, Boni, MF, Bryant, JE, Bui, DP, Campbell, JI, Carrique-Mas, J, Dang, MH, Dang, TH, Dang, TO, Day, JN, Dinh, VT, Van Doorn, HR, Duong, AH, Farrar, JJ, Hau, TTT, Ho, DTN, Hoang, BL, Hoang, VD, Huynh, TKT, Lam, CC, Le, MH, Le, TP, Le, XL, Luu, TTH, Ly, VC, Mai, TPL, Nadjm, B, Ngo, TB, Ngo, TH, Nguyen, CT, Nguyen, DT, Nguyen, D, Nguyen, KC, Nguyen, NA, Nguyen, NV, Nguyen, QH, Nguyen, TD, Nguyen, TM, Nguyen, TB, Nguyen, THT, Nguyen, TKC, Nguyen, TLN, Nguyen, TLH, Nguyen, TNL, Nguyen, TND, Nguyen, TN, Nguyen, TSC, Nguyen, TYC, Nguyen, TT, Nguyen, TV, Nguyen, VC, Nguyen, VH, Nguyen, VK, Nguyen, VMH, Nguyen, V, Nguyen, VT, Nguyen, VVC, Nguyen, VX, Pham, HM, Pham, TMK, Pham, TTT, Pham, VL, Pham, VM, Phan, VBB, Rabaa, MA, Rahman, M, Thompson, C, Thwaites, G, Ta, TDN, Tran, DHN, Tran, HMC, Tran, KT, Tran, MP, Tran, TKH, Tran, TND, Tran, TTT, Tran, TTM, Tran, TN, Tran, TH, Trinh, QT, Vo, BH, Vo, NT, Vo, QC, Voong, VP, Vu, TLH, Vu, TTH, Wertheim, H, Bogaardt, C, Chase-Topping, M, Ivens, A, Lu, L, Dung, N, Rambaut, A, Simmonds, P, Woolhouse, M, Munnink, BO, Deijs, M, Van der Hoek, L, Jebbink, MF, Farsani, SMJ, Dodd, K, Euren, J, Lucas, A, Ortiz, N, Pennacchio, L, Rubin, E, Saylors, KE, Tran, MH, Wolfe, ND

Publikováno v: Virus Evolution
Virus Evolution, 4(2):vey035. Oxford University Press

The Coronaviridae family of viruses encompasses a group of pathogens with a zoonotic potential as observed from previous outbreaks of the severe acute respiratory syndrome coronavirus and Middle East respiratory syndrome coronavirus. Accordingly, it

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::612b909b1b1d0f9d61fca465b7c9e77e

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.

Autor: Konings F; World Health Organization, Geneva, Switzerland., Perkins MD; World Health Organization, Geneva, Switzerland. perkinsm@who.int., Kuhn JH; Integrated Research Facility at Fort Detrick, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD, USA., Pallen MJ; Quadram Institute Bioscience, University of East Anglia, Norwich, UK., Alm EJ; European Centre for Disease Prevention and Control, Stockholm, Sweden., Archer BN; World Health Organization, Geneva, Switzerland., Barakat A; World Health Organization, Geneva, Switzerland., Bedford T; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Bhiman JN; National Institute for Communicable Diseases, Johannesburg, South Africa.; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa., Caly L; Victorian Infectious Diseases Reference Laboratory (VIDRL), Melbourne, Victoria, Australia., Carter LL; World Health Organization, Geneva, Switzerland., Cullinane A; Faculty of Science and Engineering, University of Limerick, Limerick, Ireland., de Oliveira T; University of KwaZulu-Natal, Durban, South Africa., Druce J; Victorian Infectious Diseases Reference Laboratory (VIDRL), Melbourne, Victoria, Australia., El Masry I; Emergency Centre for Transboundary Animal Disease, Food and Agriculture Organization of the United Nations (FAO), Cairo, Egypt., Evans R; World Health Organization, Geneva, Switzerland., Gao GF; Chinese Center for Disease Control and Prevention, Beijing, P.R. China., Gorbalenya AE; Leiden University Medical Center, Leiden, The Netherlands.; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia., Hamblion E; World Health Organization, Geneva, Switzerland., Herring BL; World Health Organization, Geneva, Switzerland., Hodcroft E; University of Bern, Bern, Switzerland., Holmes EC; The University of Sydney, Sydney, New South Wales, Australia., Kakkar M; World Health Organization, Geneva, Switzerland., Khare S; World Health Organization, Geneva, Switzerland., Koopmans MPG; Erasmus University, Rotterdam, The Netherlands., Korber B; Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM, USA., Leite J; World Health Organization, Geneva, Switzerland., MacCannell D; United States Centers for Disease Control and Prevention, Atlanta, GA, USA., Marklewitz M; World Health Organization, Geneva, Switzerland., Maurer-Stroh S; The Global Initiative on Sharing All Influenza Data (GISAID), Munich, Germany.; Bioinformatics Institute, Agency for Science, Technology and Research, Singapore, Singapore., Rico JAM; World Health Organization, Geneva, Switzerland., Munster VJ; Virus Ecology Unit, National Institute of Allergy and Infectious Diseases, Rockville, MA, USA., Neher R; Biozentrum, University of Basel, Switzerland Swiss Institute of Bioinformatics, Basel, Switzerland., Munnink BO; Erasmus University, Rotterdam, The Netherlands., Pavlin BI; World Health Organization, Geneva, Switzerland., Peiris M; The University of Hong Kong, Hong Kong, China., Poon L; The University of Hong Kong, Hong Kong, China., Pybus O; University of Oxford, Oxford, United Kingdom., Rambaut A; Institute for Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh, UK., Resende P; Laboratory of Respiratory Viruses and Measles (LVRS), Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, Brazil., Subissi L; World Health Organization, Geneva, Switzerland., Thiel V; University of Bern, Bern, Switzerland.; Institute of Virology and Immunology, Mittelhäusern, Switzerland., Tong S; United States Centers for Disease Control and Prevention, Atlanta, GA, USA., van der Werf S; Institut Pasteur, Paris, France., von Gottberg A; National Institute for Communicable Diseases, Johannesburg, South Africa.; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa., Ziebuhr J; Institute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany., Van Kerkhove MD; World Health Organization, Geneva, Switzerland.

Publikováno v: Nature microbiology [Nat Microbiol] 2021 Jul; Vol. 6 (7), pp. 821-823.

FAIR+E pathogen data for surveillance and research: lessons from COVID-19.

Autor: Neves, Aitana, Cuesta, Isabel, Hjerde, Erik, Klemetsen, Terje, Salgado, David, van Helden, Jacques, Rahman, Nadim, Fatima, Nazeefa, Karathanasis, Nestoras, Zmora, Pawel, Åkerstr¨om, Wolmar Nyberg, Grellscheid, Sushma Nagaraja, Waheed, Zahra, Blomberg, Niklas

Publikováno v: Frontiers in Public Health; 2023, p1-11, 11p

Prophylactic and early outpatient treatment of COVID-19 in patients with kidney disease: considerations from the Immunonephrology Working Group of the European Renal Association (ERA-IWG).

Autor: Hilhorst, Marc, Bemelman, Frederike J, Bruchfeld, Annette, Fernandez-Juarez, Gema M, Floege, Jürgen, Frangou, Eleni, Goumenos, Dimitrios, Kooten, Cees van, Kronbichler, Andreas, Stevens, Kate I, Turkmen, Kultigin, Wiersinga, W Joost, Anders, Hans-Joachim

Publikováno v: Nephrology Dialysis Transplantation; Aug2023, Vol. 38 Issue 8, p1807-1816, 10p