Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images.

Autor: Oostrom M; AI & Data Analytics Division, Pacific Northwest National Laboratory, Richland, WA, United States of America., Muniak MA; Vollum Institute, Oregon Health & Science University, Portland, OR, United States of America., Eichler West RM; AI & Data Analytics Division, Pacific Northwest National Laboratory, Richland, WA, United States of America., Akers S; AI & Data Analytics Division, Pacific Northwest National Laboratory, Richland, WA, United States of America., Pande P; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States of America., Obiri M; AI & Data Analytics Division, Pacific Northwest National Laboratory, Richland, WA, United States of America., Wang W; Appel Alzheimer's Disease Research Institute, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, United States of America., Bowyer K; Appel Alzheimer's Disease Research Institute, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, United States of America., Wu Z; Appel Alzheimer's Disease Research Institute, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, United States of America., Bramer LM; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States of America., Mao T; Vollum Institute, Oregon Health & Science University, Portland, OR, United States of America., Webb-Robertson BJM; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States of America.

Publikováno v: PloS one [PLoS One] 2024 Mar 29; Vol. 19 (3), pp. e0293856. Date of Electronic Publication: 2024 Mar 29 (Print Publication: 2024).

Locomotion activates PKA through dopamine and adenosine in striatal neurons.

Autor: Ma L; Vollum Institute, Oregon Health and Science University, Portland, OR, USA., Day-Cooney J; Vollum Institute, Oregon Health and Science University, Portland, OR, USA., Benavides OJ; Department of Neurosurgery and Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Palo Alto, CA, USA., Muniak MA; Vollum Institute, Oregon Health and Science University, Portland, OR, USA., Qin M; Vollum Institute, Oregon Health and Science University, Portland, OR, USA., Ding JB; Department of Neurosurgery and Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Palo Alto, CA, USA., Mao T; Vollum Institute, Oregon Health and Science University, Portland, OR, USA., Zhong H; Vollum Institute, Oregon Health and Science University, Portland, OR, USA. zhong@ohsu.edu.

Publikováno v: Nature [Nature] 2022 Nov; Vol. 611 (7937), pp. 762-768. Date of Electronic Publication: 2022 Nov 09.

Microglia Regulate Pruning of Specialized Synapses in the Auditory Brainstem.

Autor: Milinkeviciute G; Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA, United States., Henningfield CM; Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA, United States., Muniak MA; Vollum Institute, Oregon Health & Science University, Portland, OR, United States.; Hearing Research, Garvan Institute of Medical Research, Sydney, NSW, Australia.; St Vincent's Clinical School, UNSW Sydney, Sydney, NSW, Australia., Chokr SM; Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA, United States., Green KN; Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA, United States., Cramer KS; Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA, United States.

Publikováno v: Frontiers in neural circuits [Front Neural Circuits] 2019 Aug 28; Vol. 13, pp. 55. Date of Electronic Publication: 2019 Aug 28 (Print Publication: 2019).

Hidden hearing loss and endbulbs of Held: Evidence for central pathology before detection of ABR threshold increases.

Autor: Muniak MA; Hearing Research, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; St Vincent's Clinical School, UNSW Sydney, Sydney, NSW 2052, Australia. Electronic address: m@muniak.com., Ayeni FE; Hearing Research, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; School of Medical Sciences, UNSW Sydney, Sydney, NSW 2052, Australia., Ryugo DK; Hearing Research, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; School of Medical Sciences, UNSW Sydney, Sydney, NSW 2052, Australia; Department of Otolaryngology, Head, Neck & Skull Base Surgery, St Vincent's Hospital, Sydney, NSW 2010, Australia.

Publikováno v: Hearing research [Hear Res] 2018 Jul; Vol. 364, pp. 104-117. Date of Electronic Publication: 2018 Mar 20.

The effect of progressive hearing loss on the morphology of endbulbs of Held and bushy cells.

Autor: Connelly CJ; Hearing Research Unit, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW 2052, Australia. Electronic address: catconnelly22@gmail.com., Ryugo DK; Hearing Research Unit, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW 2052, Australia; Department of Otolaryngology, Head, Neck & Skull Base Surgery, St Vincent's Hospital, Sydney, NSW 2010, Australia., Muniak MA; Hearing Research Unit, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia.

Publikováno v: Hearing research [Hear Res] 2017 Jan; Vol. 343, pp. 14-33. Date of Electronic Publication: 2016 Jul 26.