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Long non-coding RNAs (ncRNAs) are involved in both positive and negative regulation of transcription. Long ncRNAs are often enriched in the nucleus and at chromatin but whether chromatin-release plays a functional role is unknown. Here, we used epige
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Akademický článek
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Autor:
Cavalleri A; Departiment of BioScience, University of Milan, 20133 Milano, Italy., Astori C; Departiment of BioScience, University of Milan, 20133 Milano, Italy., Truskina J; Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France., Cucinotta M; Departiment of BioScience, University of Milan, 20133 Milano, Italy., Farcot E; School of Mathematical Sciences, University of Nottingham, NG7 2RD Nottingham, UK., Chrysanthou E; School of Biosciences, University of Nottingham, LE12 5RD Loughborough, UK., Xu X; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Muino JM; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Kaufmann K; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Kater MM; Departiment of BioScience, University of Milan, 20133 Milano, Italy., Vernoux T; Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France., Weijers D; Laboratory of Biochemistry, Wageningen University, 6700 ET Wageningen, the Netherlands., Bennett MJ; School of Biosciences, University of Nottingham, LE12 5RD Loughborough, UK., Bhosale R; School of Biosciences, University of Nottingham, LE12 5RD Loughborough, UK., Bishopp A; School of Biosciences, University of Nottingham, LE12 5RD Loughborough, UK., Colombo L; Departiment of BioScience, University of Milan, 20133 Milano, Italy. Electronic address: lucia.colombo@unimi.it.
Publikováno v:
Cell reports [Cell Rep] 2024 Dec 24; Vol. 43 (12), pp. 115083. Date of Electronic Publication: 2024 Dec 15.
Autor:
Muino JM; Plant Cell Development, Humboldt Universität zu Berlin, Philippstr.13, 10115, Berlin, Germany.; Computational Regulatory Genomics, Humboldt-University Berlin/Max Delbrück Centre for Molecular Medicine, 10115, Berlin, Germany., Ruwe H; Molecular Genetics, Humboldt Universität zu Berlin, Philippstr.13, 10115, Berlin, Germany., Qu Y; Molecular Genetics, Humboldt Universität zu Berlin, Philippstr.13, 10115, Berlin, Germany., Maschmann S; Molecular Genetics, Humboldt Universität zu Berlin, Philippstr.13, 10115, Berlin, Germany., Chen W; Department of Biology, Southern University of Science and Technology, Shenzhen, Guangdong, China.; Medi-X Institute, SUSTech Academy for Advanced Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen, Guangdong, China., Zoschke R; Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany., Ohler U; Computational Regulatory Genomics, Humboldt-University Berlin/Max Delbrück Centre for Molecular Medicine, 10115, Berlin, Germany., Kaufmann K; Plant Cell Development, Humboldt Universität zu Berlin, Philippstr.13, 10115, Berlin, Germany., Schmitz-Linneweber C; Molecular Genetics, Humboldt Universität zu Berlin, Philippstr.13, 10115, Berlin, Germany.
Publikováno v:
The Plant journal : for cell and molecular biology [Plant J] 2024 Sep; Vol. 119 (6), pp. 2737-2752. Date of Electronic Publication: 2024 Jul 29.
Autor:
Muino JM; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115, Berlin, Germany. jose.muino-acuna@bfr.bund.de.; Current Address: German Federal Institute for Risk Assessment (BfR), German Centre for the Protection of Laboratory Animals (Bf3R), Max-Dohrn-Straße 8-10, 10589, Berlin, Germany. jose.muino-acuna@bfr.bund.de., Großmann C; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115, Berlin, Germany., Kleine T; Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Munich, Germany., Kaufmann K; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115, Berlin, Germany. kerstin.kaufmann@hu-berlin.de.
Publikováno v:
BMC plant biology [BMC Plant Biol] 2024 Feb 05; Vol. 24 (1), pp. 87. Date of Electronic Publication: 2024 Feb 05.
Autor:
van Mourik H; Laboratory of Molecular Biology, Wageningen University & Research, Wageningen, the Netherlands., Chen P; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Smaczniak C; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Boeren S; Laboratory of Biochemistry, Wageningen University & Research, Wageningen, the Netherlands., Kaufmann K; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Bemer M; Laboratory of Molecular Biology, Wageningen University & Research, Wageningen, the Netherlands.; Department of Bioscience, Wageningen University & Research, Wageningen, the Netherlands., Angenent GC; Laboratory of Molecular Biology, Wageningen University & Research, Wageningen, the Netherlands.; Department of Bioscience, Wageningen University & Research, Wageningen, the Netherlands., Muino JM; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany. jose.muino@hu-berlin.de.
Publikováno v:
Nature plants [Nat Plants] 2023 Mar; Vol. 9 (3), pp. 473-485. Date of Electronic Publication: 2023 Feb 16.
Autor:
Chen P; Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Smaczniak C; Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Haffner J; Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Muino JM; Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Kaufmann K; Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Berlin, Germany. kerstin.kaufmann@hu-berlin.de.
Publikováno v:
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2023; Vol. 2698, pp. 147-161.
Autor:
Neumann M; Institute for Biology, Humboldt-Universität zu Berlin, Berlin, Germany. manuel.neumann@hu-berlin.de., Muino JM; Institute for Biology, Humboldt-Universität zu Berlin, Berlin, Germany.
Publikováno v:
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2023; Vol. 2686, pp. 567-580.
Autor:
Neumann M; Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany., Xu X; Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany., Smaczniak C; Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany., Schumacher J; Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany., Yan W; Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany., Blüthgen N; Institute of Pathology, Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany., Greb T; Department of Developmental Physiology, Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany., Jönsson H; The Sainsbury Laboratory, University of Cambridge, Bateman Street, Cambridge, CB2 1LR, UK., Traas J; Laboratoire RDP, Université de Lyon 1, ENS-Lyon, INRAE, CNRS, UCBL, 69364, Lyon, France., Kaufmann K; Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany., Muino JM; Systems Biology of Gene Regulation, Humboldt-Universität zu Berlin, Institute of Biology, Berlin, Germany. jose.muino@hu-berlin.de.
Publikováno v:
Nature communications [Nat Commun] 2022 May 20; Vol. 13 (1), pp. 2838. Date of Electronic Publication: 2022 May 20.
Autor:
Sunaga-Franze DY; Genomics Platforms, Max Delbrück Center for Molecular Medicine in the Helmholtz Association/Berlin Institute of Health, Berlin, Germany., Muino JM; Systems Biology of Gene Regulation, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Braeuning C; Genomics Platforms, Max Delbrück Center for Molecular Medicine in the Helmholtz Association/Berlin Institute of Health, Berlin, Germany., Xu X; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Zong M; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Smaczniak C; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Yan W; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Fischer C; Genomics Platforms, Max Delbrück Center for Molecular Medicine in the Helmholtz Association/Berlin Institute of Health, Berlin, Germany., Vidal R; Genomics Platforms, Max Delbrück Center for Molecular Medicine in the Helmholtz Association/Berlin Institute of Health, Berlin, Germany., Kliem M; Genomics Platforms, Max Delbrück Center for Molecular Medicine in the Helmholtz Association/Berlin Institute of Health, Berlin, Germany., Kaufmann K; Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany., Sauer S; Genomics Platforms, Max Delbrück Center for Molecular Medicine in the Helmholtz Association/Berlin Institute of Health, Berlin, Germany.
Publikováno v:
The Plant journal : for cell and molecular biology [Plant J] 2021 Nov; Vol. 108 (3), pp. 859-869. Date of Electronic Publication: 2021 Sep 15.