Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Mudra Choudhury"'
Autor:
Zhiheng Liu, Giovanni Quinones-Valdez, Ting Fu, Elaine Huang, Mudra Choudhury, Fairlie Reese, Ali Mortazavi, Xinshu Xiao
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-18 (2023)
Abstract Although long-read RNA-seq is increasingly applied to characterize full-length transcripts it can also enable detection of nucleotide variants, such as genetic mutations or RNA editing sites, which is significantly under-explored. Here, we p
Externí odkaz:
https://doaj.org/article/cb2b9ccedc6841eebe622d52e83422cf
Autor:
Arshad H. Khan, Jared R. Bagley, Nathan LaPierre, Carlos Gonzalez-Figueroa, Tadeo C. Spencer, Mudra Choudhury, Xinshu Xiao, Eleazar Eskin, James D. Jentsch, Desmond J. Smith
Publikováno v:
Cell Reports, Vol 42, Iss 8, Pp 112856- (2023)
Summary: To identify addiction genes, we evaluate intravenous self-administration of cocaine or saline in 84 inbred and recombinant inbred mouse strains over 10 days. We integrate the behavior data with brain RNA-seq data from 41 strains. The self-ad
Externí odkaz:
https://doaj.org/article/76106c85485d410382c1b263021a215e
Autor:
Rong Zheng, Mikayla Dunlap, Jingyi Lyu, Carlos Gonzalez-Figueroa, Georg Bobkov, Samuel E. Harvey, Tracey W. Chan, Giovanni Quinones-Valdez, Mudra Choudhury, Amy Vuong, Ryan A. Flynn, Howard Y. Chang, Xinshu Xiao, Chonghui Cheng
Publikováno v:
bioRxiv
RNA splicing plays a critical role in post-transcriptional gene regulation. Exponential expansion of intron length poses a challenge for accurate splicing. Little is known about how cells prevent inadvertent and often deleterious expression of intron
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ffb6aedb4a3d84d34022dc077838872
https://europepmc.org/articles/PMC9980139/
https://europepmc.org/articles/PMC9980139/
Autor:
Arshad H. Khan, Jared R. Bagley, Nathan LaPierre, Carlos Gonzalez-Figueroa, Tadeo C. Spencer, Mudra Choudhury, Xinshu Xiao, Eleazar Eskin, James D. Jentsch, Desmond J. Smith
To identify genetic pathways for addiction, we analyzed intravenous self-administration of cocaine or saline in a panel of 84 inbred and recombinant inbred mouse strains over 10 days. We integrated the behavior data with RNA-Seq data from the medial
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::88d2a06bb0e9271b9b96b21669deac40
https://doi.org/10.1101/2022.11.10.516062
https://doi.org/10.1101/2022.11.10.516062
Autor:
Ting Fu, Ali Mortazavi, Giovanni Quinones-Valdez, Mudra Choudhury, Xinshu Xiao, Zhiheng Liu, Fairlie Reese
Using third-generation sequencers, long-read RNA-seq is increasingly applied in transcriptomic studies given its major advantage in characterizing full-length transcripts. A number of methods have been developed to analyze this new type of data for t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::92d01529278ce0ba4a0fa1e33db4ef0c
https://doi.org/10.1101/2022.03.23.485515
https://doi.org/10.1101/2022.03.23.485515
Autor:
Stephen A. Ramsey, Mudra Choudhury
Publikováno v:
Gene Regulation and Systems Biology, Vol 2016, Iss 10, Pp 105-110 (2016)
Gene Regulation and Systems Biology, Vol 10 (2016)
Gene Regulation and Systems Biology
Gene Regulation and Systems Biology, Vol 10 (2016)
Gene Regulation and Systems Biology
We describe a novel computational approach to identify transcription factors (TFs) that are candidate regulators in a human cell type of interest. Our approach involves integrating cell type-specific expression quantitative trait locus (eQTL) data an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d75cdcec177c5a372902e47c7e2c6208
https://doi.org/10.4137/grsb.s40768
https://doi.org/10.4137/grsb.s40768